chr2 : 174,792,419 – 174,792,812
393 bp 36 TFs 1 linked gene
This 393 bp open chromatin element is linked to CHRNA1 and is bound by 36 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CHRNA1 4.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:174,787,419 – 174,797,812
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_DHT_TNFA GSE83860.AR.LNCaP_DHT_TNFA 142 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 119 bp overlap
BRD4 1 dataset
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 118 bp overlap
CBFA2T2 1 dataset
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 166 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 137 bp overlap
ChIP K562 ENCFF673OEZ 198 bp overlap
CEBPA 1 dataset
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 94 bp overlap
CEBPB 7 datasets
ChIP A549 ENCFF235AIY 119 bp overlap
ChIP IMR-90 ENCFF468UGY 120 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 96 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 95 bp overlap
ChIP K562 ENCFF189VBN 154 bp overlap
ChIP K562 ENCFF194QGF 146 bp overlap
ChIP K562 ENCFF584CTB 234 bp overlap
CEBPD 1 dataset
ChIP HAEC_IL1b_4h GSE89970.CEBPD.HAEC_IL1b_4h 136 bp overlap
CEBPG 4 datasets
ChIP K-562 ENCSR620VIC.CEBPG.K-562 183 bp overlap
ChIP K-562 ENCSR490LWA.CEBPG.K-562 158 bp overlap
ChIP K562 ENCFF783ADE 277 bp overlap
ChIP K562 ENCFF956TPS 242 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 250 bp overlap
ChIP BLaER1 ENCFF093OYK 212 bp overlap
ChIP BLaER1 ENCFF274GAT 251 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 228 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 81 bp overlap
FOXA1 8 datasets
ChIP LNCaP GSE64656.FOXA1.LNCaP 214 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 145 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 114 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 191 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 209 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 142 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 169 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 230 bp overlap
FOXA2 6 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 135 bp overlap
ChIP DE DE-FOXA2-1 383 bp overlap
ChIP DE DE-FOXA2-2 344 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 183 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 339 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 287 bp overlap
FOXA3 1 dataset
ChIP K562 ENCFF781VSC 151 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 89 bp overlap
GATA2 4 datasets
ChIP K562 ENCFF544PCK 169 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 214 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 214 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 212 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 146 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 208 bp overlap
ChIP DE DE-GATA4-1 324 bp overlap
ChIP DE DE-GATA4-2 393 bp overlap
ChIP foregut GSE117136.GATA4.foregut 240 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 393 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 393 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 389 bp overlap
ChIP DE DE-GATA6-2 351 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 206 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 281 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 141 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 360 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 291 bp overlap
JUN 1 dataset
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 172 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 154 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 219 bp overlap
MAFF 4 datasets
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 161 bp overlap
ChIP HepG2 ENCFF452YUT 227 bp overlap
ChIP K-562 ENCSR000EGI.MAFF.K-562 142 bp overlap
ChIP K562 ENCFF071YKK 225 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 328 bp overlap
ChIP K562 ENCFF455EEO 318 bp overlap
MAFK 7 datasets
ChIP A549 ENCFF371EPR 187 bp overlap
ChIP H1 ENCFF854XWE 226 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 176 bp overlap
ChIP HepG2 ENCFF743ZOF 92 bp overlap
ChIP HepG2 ENCFF767LDG 213 bp overlap
ChIP IMR-90 ENCFF336DHZ 221 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 194 bp overlap
MYB 3 datasets
ChIP DU528 GSE94000.MYB.DU528 269 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 179 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 180 bp overlap
RELA 33 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 119 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 245 bp overlap
ChIP LNCaP_DHT_TNFA GSE83860.RELA.LNCaP_DHT_TNFA 278 bp overlap
ChIP LNCaP_SICTR_TNFA GSE83860.RELA.LNCaP_SICTR_TNFA 178 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 181 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 180 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 209 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 140 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 195 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 183 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 341 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 189 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 76 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 142 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 176 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 190 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 82 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 344 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 164 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 281 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 163 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 233 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 159 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 201 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 83 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 140 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 154 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 161 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 139 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 214 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 181 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 111 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 142 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 112 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 112 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 137 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 317 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 58 bp overlap
TAL1 7 datasets
ChIP K-562 ENCSR106FRG.TAL1.K-562 224 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 156 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 129 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 136 bp overlap
ChIP K562 ENCFF620GMX 186 bp overlap
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 106 bp overlap
ChIP RPMI8402 GSE39179.TAL1.RPMI8402 283 bp overlap
TCF12 1 dataset
ChIP RPMI8402 GSE39179.TCF12.RPMI8402 245 bp overlap
TCF3 1 dataset
ChIP RPMI8402 GSE39179.TCF3.RPMI8402 203 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 219 bp overlap
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