Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

36 transcription factors

ARNTL 1 dataset

ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 209 bp overlap

CTCF 11 datasets

ChIP GM23338 ENCFF772DML 201 bp overlap

ChIP H1 ENCFF414GZI 217 bp overlap

ChIP H1 ENCFF764RHO 260 bp overlap

ChIP H9 ENCFF152GTF 396 bp overlap

ChIP WA01 ENCSR000BNH.CTCF.WA01 114 bp overlap

ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 206 bp overlap

ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 183 bp overlap

ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 183 bp overlap

ChIP neural progenitor cell ENCFF420RBO 348 bp overlap

ChIP neural progenitor cell ENCFF420RBO 144 bp overlap

ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 218 bp overlap

FOXA1 1 dataset

ChIP MCF-7 GSE59530.FOXA1.MCF-7 91 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-2 180 bp overlap

HOXB13 2 datasets

Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap

Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap

Hoxd13 2 datasets

Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap

Motif ES_0h ES_0h-Hoxd13_MA0909.4 7 bp overlap

IRF2 1 dataset

Motif ES_0h ES_0h-IRF2_MA0051.2 16 bp overlap

IRF4 1 dataset

Motif ES_0h ES_0h-IRF4_MA1419.2 14 bp overlap

IRF9 1 dataset

Motif ES_0h ES_0h-IRF9_MA0653.1 15 bp overlap

Lhx3 2 datasets

Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap

Motif ES_0h ES_0h-Lhx3_MA0135.2 12 bp overlap

MEF2B 1 dataset

Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap

MEF2D 1 dataset

Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap

MEIS1 1 dataset

Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap

NANOG 1 dataset

ChIP hESC GSE18292.NANOG.hESC 93 bp overlap

NKX2-2 1 dataset

Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap

NKX2-5 1 dataset

Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap

NR1D1 1 dataset

Motif ES_0h ES_0h-NR1D1_MA1531.2 14 bp overlap

NR1D2 1 dataset

Motif ES_0h ES_0h-NR1D2_MA1532.2 15 bp overlap

Nr5A2 1 dataset

Motif ES_0h ES_0h-Nr5A2_MA0505.3 9 bp overlap

ONECUT3 2 datasets

Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap

Motif ES_0h ES_0h-ONECUT3_MA0757.2 12 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap

PSIP1 1 dataset

ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 76 bp overlap

RAD21 10 datasets

ChIP H1 ENCFF698EWO 220 bp overlap

ChIP H1 ENCFF967OJF 211 bp overlap

ChIP WA09 GSE105028.RAD21.WA09 253 bp overlap

ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 249 bp overlap

ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 175 bp overlap

ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 192 bp overlap

ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 147 bp overlap

ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 224 bp overlap

ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 161 bp overlap

ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 215 bp overlap

RARA::RXRG 1 dataset

Motif DE_12h DE_12h-RARARXRG_MA1149.2 17 bp overlap

SIX2 1 dataset

Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap

SMAD1 1 dataset

ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap

SMAD2-3 1 dataset

ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 126 bp overlap

SOX11 1 dataset

ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 94 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 99 bp overlap

SP5 1 dataset

Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap

THAP1 1 dataset

Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap

ZNF136 2 datasets

Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap

Motif ES_0h ES_0h-ZNF136_MA1588.1 15 bp overlap

ZNF418 1 dataset

Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap

ZNF768 1 dataset

Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap

ZNF816 1 dataset

Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Genome Browser