chr2 : 131,723,921 – 131,724,404
483 bp 42 TFs 1 linked gene
This 483 bp open chromatin element is linked to TOMM40P4 and is bound by 42 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TOMM40P4 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:131,718,921 – 131,729,404
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 325 bp overlap
ARNT::HIF1A 4 datasets
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_24h DE_24h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif ES_0h ES_0h-ARNTHIF1A_MA0259.2 5 bp overlap
Ahr::Arnt 4 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_48h DE_48h-AhrArnt_MA0006.2 5 bp overlap
CTCF 5 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP endodermal cell ENCFF471YCZ 185 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 145 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 255 bp overlap
ChIP BLaER1 ENCFF364PUR 358 bp overlap
EGR1 1 dataset
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
EGR4 1 dataset
Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap
ETV2::FIGLA 4 datasets
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif DE_24h DE_24h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif DE_36h DE_36h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif ES_0h ES_0h-ETV2FIGLA_MA1941.2 13 bp overlap
HES6 4 datasets
Motif DE_12h DE_12h-HES6_MA1493.1 10 bp overlap
Motif DE_24h DE_24h-HES6_MA1493.1 10 bp overlap
Motif DE_36h DE_36h-HES6_MA1493.1 10 bp overlap
Motif ES_0h ES_0h-HES6_MA1493.1 10 bp overlap
IRF4 3 datasets
Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap
Motif DE_36h DE_36h-IRF4_MA1419.2 14 bp overlap
Motif DE_48h DE_48h-IRF4_MA1419.2 14 bp overlap
IRF5 3 datasets
Motif DE_12h DE_12h-IRF5_MA1420.1 14 bp overlap
Motif DE_36h DE_36h-IRF5_MA1420.1 14 bp overlap
Motif DE_48h DE_48h-IRF5_MA1420.1 14 bp overlap
IRF8 3 datasets
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
Motif DE_36h DE_36h-IRF8_MA0652.2 13 bp overlap
Motif DE_48h DE_48h-IRF8_MA0652.2 13 bp overlap
JUN::JUNB 3 datasets
Motif DE_12h DE_12h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_36h DE_36h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_48h DE_48h-JUNJUNB_MA1132.2 8 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Nrf1 1 dataset
Motif DE_12h DE_12h-Nrf1_MA0506.3 12 bp overlap
PATZ1 3 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif DE_36h DE_36h-PATZ1_MA1961.2 11 bp overlap
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
PAX2 3 datasets
Motif DE_12h DE_12h-PAX2_MA0067.3 16 bp overlap
Motif DE_36h DE_36h-PAX2_MA0067.3 16 bp overlap
Motif DE_48h DE_48h-PAX2_MA0067.3 16 bp overlap
PAX5 3 datasets
Motif DE_12h DE_12h-PAX5_MA0014.4 8 bp overlap
Motif DE_36h DE_36h-PAX5_MA0014.4 8 bp overlap
Motif DE_48h DE_48h-PAX5_MA0014.4 8 bp overlap
PAX8 3 datasets
Motif DE_12h DE_12h-PAX8_MA2094.1 16 bp overlap
Motif DE_36h DE_36h-PAX8_MA2094.1 16 bp overlap
Motif DE_48h DE_48h-PAX8_MA2094.1 16 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 455 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 478 bp overlap
PRDM9 3 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 246 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 314 bp overlap
SMAD2_3 1 dataset
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 395 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 275 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 416 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 207 bp overlap
TCFL5 3 datasets
Motif DE_12h DE_12h-TCFL5_MA0632.3 8 bp overlap
Motif DE_36h DE_36h-TCFL5_MA0632.3 8 bp overlap
Motif DE_48h DE_48h-TCFL5_MA0632.3 8 bp overlap
TFAP2A 5 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 9 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0811.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0811.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0812.2 9 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 2 datasets
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
Motif ES_0h ES_0h-TFAP2E_MA1569.2 9 bp overlap
TFAP4::ETV1 4 datasets
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
Motif DE_24h DE_24h-TFAP4ETV1_MA1966.2 13 bp overlap
Motif DE_36h DE_36h-TFAP4ETV1_MA1966.2 13 bp overlap
Motif ES_0h ES_0h-TFAP4ETV1_MA1966.2 13 bp overlap
ZIC5 3 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF213 6 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
Motif DE_36h DE_36h-ZNF213_MA2121.1 12 bp overlap
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF610 2 datasets
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
Motif DE_36h DE_36h-ZNF610_MA1713.2 10 bp overlap
ZNF93 5 datasets
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif DE_36h DE_36h-ZNF93_MA1721.2 14 bp overlap
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