chr2 : 69,348,684 69,349,416
732 bp 41 TFs 3 linked genes
This 732 bp open chromatin element is linked to GFPT1, NFU1, and AAK1 and is bound by 41 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
GFPT1 38.2 kb Distal Multiome
NFU1 88.4 kb Distal Multiome
AAK1 294.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:69,343,684 – 69,354,416
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 278 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 428 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 400 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 323 bp overlap
ERF::FOXO1 2 datasets
Motif DE_60h DE_60h-ERFFOXO1_MA1936.2 12 bp overlap
Motif DE_72h DE_72h-ERFFOXO1_MA1936.2 12 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FOSL2 1 dataset
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
FOXA1 2 datasets
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 126 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 426 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 363 bp overlap
ChIP BJ1-hTERT_Mimo GSE90454.FOXA2.BJ1-hTERT_Mimo 272 bp overlap
ChIP BJ1-hTERT_Mimo_Release GSE90454.FOXA2.BJ1-hTERT_Mimo_Release 315 bp overlap
ChIP DE DE-FOXA2-1 727 bp overlap
ChIP DE DE-FOXA2-2 679 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 483 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 575 bp overlap
ChIP DE DE-GATA4-2 677 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 461 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 732 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 582 bp overlap
ChIP DE DE-GATA6-2 732 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 349 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 364 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 395 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 275 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 590 bp overlap
GLYR1 1 dataset
ChIP HeLa GSE20303.GLYR1.HeLa 457 bp overlap
IKZF2 1 dataset
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
JUNB 1 dataset
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 162 bp overlap
MAFK 1 dataset
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
MTF1 2 datasets
Motif DE_60h DE_60h-MTF1_MA0863.1 14 bp overlap
Motif DE_72h DE_72h-MTF1_MA0863.1 14 bp overlap
Mafg 1 dataset
Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 251 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 170 bp overlap
NKX2-2 2 datasets
Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 2 datasets
Motif DE_60h DE_60h-NKX2-5_MA0063.3 7 bp overlap
Motif DE_72h DE_72h-NKX2-5_MA0063.3 7 bp overlap
PBX3 1 dataset
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
PDX1 2 datasets
ChIP hESC GSE58685.PDX1.hESC 146 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 254 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 457 bp overlap
POU2F3 2 datasets
Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap
Motif DE_72h DE_72h-POU2F3_MA0627.3 9 bp overlap
RBM22 5 datasets
ChIP HepG2 ENCFF292RVQ 117 bp overlap
ChIP HepG2 ENCFF561IAJ 123 bp overlap
ChIP K-562 GSE120104.RBM22.K-562 160 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 117 bp overlap
ChIP K562 ENCFF420JDS 132 bp overlap
RXRA::VDR 2 datasets
Motif DE_60h DE_60h-RXRAVDR_MA0074.1 15 bp overlap
Motif DE_72h DE_72h-RXRAVDR_MA0074.1 15 bp overlap
SCRT1 2 datasets
Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap
Motif DE_72h DE_72h-SCRT1_MA0743.3 10 bp overlap
SCRT2 2 datasets
Motif DE_60h DE_60h-SCRT2_MA0744.3 10 bp overlap
Motif DE_72h DE_72h-SCRT2_MA0744.3 10 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 513 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 184 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 550 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 359 bp overlap
SP5 2 datasets
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
STAT6 1 dataset
ChIP HepG2 ENCFF370LZV 351 bp overlap
Spz1 1 dataset
Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap
ZNF24 2 datasets
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
Motif DE_72h DE_72h-ZNF24_MA1124.1 13 bp overlap
ZNF263 2 datasets
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ZNF324 2 datasets
Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap
Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap
ZZZ3 1 dataset
ChIP K-562 ENCSR780BBJ.ZZZ3.K-562 490 bp overlap