chrX : 119,007,145 119,007,885
740 bp 49 TFs 3 linked genes
This 740 bp open chromatin element is linked to LINC01285, PGRMC1, and IL13RA1 and is bound by 49 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
LINC01285 167.9 kb Distal Multiome
PGRMC1 228.8 kb Distal Multiome
IL13RA1 279.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:119,002,145 – 119,012,885
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
CEBPA 1 dataset
Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap
CTCF 12 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 200 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 86 bp overlap
ChIP C4-2B ENCFF821XVN 68 bp overlap
ChIP GM12873 ENCFF711LOS 285 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 212 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 271 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 158 bp overlap
ChIP Panc1 ENCFF056JQX 101 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 186 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 103 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 126 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 57 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 234 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 729 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 191 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 140 bp overlap
ChIP DE DE-FOXA2-1 637 bp overlap
ChIP DE DE-FOXA2-2 652 bp overlap
GATA2 1 dataset
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 740 bp overlap
ChIP DE DE-GATA4-2 740 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 529 bp overlap
ChIP foregut GSE117136.GATA4.foregut 625 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 693 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 548 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 59 bp overlap
GATA6 17 datasets
ChIP AGS GSE51705.GATA6.AGS 523 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 498 bp overlap
ChIP DE DE-GATA6-1 657 bp overlap
ChIP DE DE-GATA6-2 740 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 740 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 658 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 655 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 639 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 740 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 740 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 740 bp overlap
ChIP foregut GSE117136.GATA6.foregut 740 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 548 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 659 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 658 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 553 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 138 bp overlap
HOXC12 1 dataset
Motif DE_60h DE_60h-HOXC12_MA0906.2 10 bp overlap
HOXD11 1 dataset
Motif DE_60h DE_60h-HOXD11_MA0908.2 9 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 288 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 364 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 532 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 432 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_60h DE_60h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_60h DE_60h-MEIS3_MA0775.2 7 bp overlap
NR2F1 1 dataset
Motif DE_60h DE_60h-NR2F1_MA0017.3 12 bp overlap
PBX3 1 dataset
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
PKNOX2 1 dataset
Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 415 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 289 bp overlap
RUNX3 2 datasets
Motif DE_36h DE_36h-RUNX3_MA0684.3 8 bp overlap
Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap
RXRB 1 dataset
Motif DE_60h DE_60h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_60h DE_60h-RXRG_MA0856.1 14 bp overlap
Rhox11 1 dataset
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
Rxra 1 dataset
Motif DE_60h DE_60h-Rxra_MA0512.2 14 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 564 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 594 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 254 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 530 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 441 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 425 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 636 bp overlap
Stat5a::Stat5b 3 datasets
Motif DE_36h DE_36h-Stat5aStat5b_MA0519.2 9 bp overlap
Motif DE_60h DE_60h-Stat5aStat5b_MA0519.2 9 bp overlap
Motif DE_72h DE_72h-Stat5aStat5b_MA0519.2 9 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 406 bp overlap
TGIF1 1 dataset
Motif DE_60h DE_60h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_60h DE_60h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_60h DE_60h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_60h DE_60h-TGIF2LY_MA1572.1 12 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 122 bp overlap
ZKSCAN3 1 dataset
Motif DE_60h DE_60h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF257 1 dataset
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
ZNF382 1 dataset
Motif DE_60h DE_60h-ZNF382_MA1594.1 24 bp overlap
ZNF574 3 datasets
Motif DE_36h DE_36h-ZNF574_MA1982.2 14 bp overlap
Motif DE_60h DE_60h-ZNF574_MA1982.2 14 bp overlap
Motif DE_72h DE_72h-ZNF574_MA1982.2 14 bp overlap
ZNF680 1 dataset
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
ZNF708 2 datasets
Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap
Motif DE_72h DE_72h-ZNF708_MA1730.2 9 bp overlap
ZNF8 1 dataset
Motif DE_60h DE_60h-ZNF8_MA1718.1 20 bp overlap