chrX : 106,393,182 – 106,393,541
359 bp 31 TFs 0 linked genes
This 359 bp open chromatin element has no linked target genes and is bound by 31 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:106,388,182 – 106,398,541
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 140 bp overlap
CREB1 1 dataset
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 254 bp overlap
CTCF 140 datasets
ChIP GM04648 GSE148179.CTCF.GM04648 158 bp overlap
ChIP GM12878 ENCFF511URZ 197 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 122 bp overlap
ChIP GM23338 ENCFF531QOI 243 bp overlap
ChIP GM23338 ENCFF772DML 152 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 359 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 274 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 222 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 214 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 325 bp overlap
ChIP HCT116 ENCFF003KHP 145 bp overlap
ChIP HCT116 ENCFF373YMA 110 bp overlap
ChIP HEK293 ENCFF498RMM 207 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 227 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 115 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 84 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 269 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 222 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 222 bp overlap
ChIP MCF-10CA1a GSE98551.CTCF.MCF-10CA1a 142 bp overlap
ChIP MCF-7 ENCFF139NQI 213 bp overlap
ChIP MCF-7 ENCFF162GNE 81 bp overlap
ChIP MCF-7 ENCFF198DQX 194 bp overlap
ChIP MCF-7 ENCFF210JUZ 154 bp overlap
ChIP MCF-7 ENCFF494VXA 194 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 359 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 262 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 204 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 195 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 193 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 147 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 165 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 112 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 271 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 286 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 233 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 244 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 161 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 191 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 185 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 109 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 359 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 199 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 178 bp overlap
ChIP PC-3 ENCFF487TUI 160 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 284 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 287 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 148 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 120 bp overlap
ChIP adrenal gland ENCFF678WUB 268 bp overlap
ChIP adrenal gland ENCFF886WNR 359 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 281 bp overlap
ChIP adrenal-gland ENCSR770IWO.CTCF.adrenal-gland 213 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 198 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 136 bp overlap
ChIP body of pancreas ENCFF269EDN 318 bp overlap
ChIP body of pancreas ENCFF438KTE 163 bp overlap
ChIP body of pancreas ENCFF798MEO 265 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 203 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 226 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 275 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 170 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 222 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 95 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 246 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 206 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 194 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 190 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 214 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 222 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 227 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF373BUI 234 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 281 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF403LNW 308 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 317 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 317 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 293 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 298 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF756TDJ 241 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 359 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 230 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 263 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 189 bp overlap
ChIP epithelial_mammary ENCSR000ALV.CTCF.epithelial_mammary 120 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 231 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 251 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 166 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 208 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 261 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 247 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 213 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 165 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 267 bp overlap
ChIP hESC_PRIMED GSE69646.CTCF.hESC_PRIMED 214 bp overlap
ChIP hepatocyte ENCFF263BLJ 257 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 208 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 153 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 170 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 190 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 229 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 157 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 214 bp overlap
ChIP islet ERP004003.CTCF.islet 151 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte ENCFF667ULX 238 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 241 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 225 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 195 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 185 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 222 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 195 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 230 bp overlap
ChIP nerve_tibial ENCSR434XLP.CTCF.nerve_tibial 217 bp overlap
ChIP nerve_tibial ENCSR469POZ.CTCF.nerve_tibial 183 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 256 bp overlap
ChIP neural progenitor cell ENCFF420RBO 119 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 199 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 170 bp overlap
ChIP ovary ENCFF062XMG 334 bp overlap
ChIP ovary ENCFF845YUT 154 bp overlap
ChIP ovary ENCSR493APD.CTCF.ovary 301 bp overlap
ChIP ovary ENCSR548DDS.CTCF.ovary 235 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 115 bp overlap
ChIP pancreas_body ENCSR307PFP.CTCF.pancreas_body 249 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 246 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 172 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 189 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 305 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 198 bp overlap
ChIP testis ENCFF128XQJ 309 bp overlap
ChIP testis ENCFF409BGH 240 bp overlap
ChIP testis ENCSR981CID.CTCF.testis 338 bp overlap
ChIP testis ENCSR494TNM.CTCF.testis 261 bp overlap
ChIP testis ENCSR753RME.CTCF.testis 165 bp overlap
ChIP tibial nerve ENCFF665IWH 356 bp overlap
ChIP uterus ENCFF466ZUR 275 bp overlap
ChIP uterus ENCSR392SFJ.CTCF.uterus 227 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 275 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 316 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 297 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 287 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 290 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 302 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 280 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 297 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 289 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 284 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 185 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 211 bp overlap
GATA3 1 dataset
ChIP MCF-7 ENCFF352QVM 359 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 300 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 333 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-2 266 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 286 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 205 bp overlap
ICE2 1 dataset
ChIP HCT-116 GSE47938.ICE2.HCT-116 232 bp overlap
OLIG2 2 datasets
ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 230 bp overlap
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 359 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 171 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 273 bp overlap
OTX1 1 dataset
ChIP MCF-7 ENCFF645GYL 275 bp overlap
RAD21 32 datasets
ChIP GM12878 ENCFF101UQZ 191 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 154 bp overlap
ChIP H1 ENCFF698EWO 229 bp overlap
ChIP H1 ENCFF967OJF 231 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 359 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 359 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 335 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 326 bp overlap
ChIP HCT116 ENCFF568PEO 163 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 311 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 359 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP Ishikawa ENCFF570JVV 213 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 113 bp overlap
ChIP K562 ENCFF634XYR 286 bp overlap
ChIP MCF-7 ENCFF694KOM 279 bp overlap
ChIP MCF-7 ENCFF724VCQ 181 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 353 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 285 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 278 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 269 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 233 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 171 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 345 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 232 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 263 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 155 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 211 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 257 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 267 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 179 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 234 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 107 bp overlap
SMC1 3 datasets
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 184 bp overlap
ChIP HMEC-1 GSE101921.SMC1.HMEC-1 156 bp overlap
ChIP MCF-10A GSE101921.SMC1.MCF-10A 193 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE76893.SMC1A.MCF-7 205 bp overlap
SMC3 1 dataset
ChIP hESC_D0 GSE116862.SMC3.hESC_D0 199 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 277 bp overlap
SOX6 1 dataset
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 257 bp overlap
STAG1 4 datasets
ChIP HMEC-1 GSE101921.STAG1.HMEC-1 145 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 249 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 359 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 359 bp overlap
SUZ12 1 dataset
ChIP MCF-7 ENCSR757EMK.SUZ12.MCF-7 211 bp overlap
TARDBP 1 dataset
ChIP MCF-7 ENCSR801SWX.TARDBP.MCF-7 220 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 95 bp overlap
TCF7L2 2 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 308 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 189 bp overlap
TRIM22 1 dataset
ChIP MCF-7 ENCSR875PEI.TRIM22.MCF-7 192 bp overlap
ZBTB2 2 datasets
ChIP GM12878 GSE97661.ZBTB2.GM12878 187 bp overlap
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 168 bp overlap
ZNF444 2 datasets
ChIP MCF-7 ENCFF602QFR 347 bp overlap
ChIP MCF-7 ENCSR038XIA.ZNF444.MCF-7 297 bp overlap
ZNF579 1 dataset
ChIP MCF-7 ENCSR018MQH.ZNF579.MCF-7 273 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 293 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 321 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 229 bp overlap
Huangfu Lab · Publications · Resources · Contact