Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

26 transcription factors

BARX2 1 dataset

Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap

BRD4 2 datasets

ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 82 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 125 bp overlap

CTCF 43 datasets

ChIP BE2C ENCFF757SRF 232 bp overlap

ChIP BE2C ENCSR000DQD.CTCF.BE2C 161 bp overlap

Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap

ChIP GM23338 ENCFF772DML 201 bp overlap

ChIP H1 ENCFF414GZI 175 bp overlap

ChIP H1 ENCFF764RHO 230 bp overlap

ChIP H9 ENCFF152GTF 214 bp overlap

ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 154 bp overlap

ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 163 bp overlap

ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 196 bp overlap

ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 207 bp overlap

ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 181 bp overlap

ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 170 bp overlap

ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 171 bp overlap

ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 236 bp overlap

ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 154 bp overlap

ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 137 bp overlap

ChIP NB69 GSE101295.CTCF.NB69 206 bp overlap

ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 185 bp overlap

ChIP SK-N-SH ENCFF731NJX 200 bp overlap

ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 273 bp overlap

ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 152 bp overlap

ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 117 bp overlap

ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 189 bp overlap

ChIP brain ENCFF067KUH 288 bp overlap

ChIP brain ENCFF067KUH 82 bp overlap

ChIP brain ENCFF163BBN 354 bp overlap

ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 192 bp overlap

ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 155 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 128 bp overlap

ChIP endodermal cell ENCFF471YCZ 206 bp overlap

ChIP hESC_D0 GSE116862.CTCF.hESC_D0 152 bp overlap

ChIP hESC_D2 GSE116862.CTCF.hESC_D2 172 bp overlap

ChIP hESC_D5 GSE116862.CTCF.hESC_D5 307 bp overlap

ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 131 bp overlap

ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 158 bp overlap

ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 147 bp overlap

ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 109 bp overlap

ChIP leukemia GSE142161.CTCF.leukemia 213 bp overlap

ChIP neural ENCSR822CEA.CTCF.neural 231 bp overlap

ChIP neural progenitor cell ENCFF420RBO 145 bp overlap

ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 298 bp overlap

ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 139 bp overlap

CTCFL 1 dataset

Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap

Dux 1 dataset

Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap

EP300 2 datasets

ChIP neural ENCSR843ZUP.EP300.neural 345 bp overlap

ChIP neural cell ENCFF442QNK 278 bp overlap

EZH2 1 dataset

ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 160 bp overlap

GATA3 1 dataset

ChIP Kelly GSE94822.GATA3.Kelly 209 bp overlap

GATA6 1 dataset

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 128 bp overlap

HAND2 1 dataset

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 233 bp overlap

ISL1 1 dataset

ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 322 bp overlap

Isl1 2 datasets

Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap

MZF1 1 dataset

Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap

PHOX2B 1 dataset

ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 187 bp overlap

POLR2A 1 dataset

ChIP neural cell ENCFF604SPB 315 bp overlap

RAD21 6 datasets

ChIP SK-N-SH ENCFF747MAS 209 bp overlap

ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 201 bp overlap

ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 181 bp overlap

ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 146 bp overlap

ChIP neural ENCSR198ZYJ.RAD21.neural 230 bp overlap

ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 179 bp overlap

RARA 1 dataset

ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 228 bp overlap

RCOR1 1 dataset

ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 110 bp overlap

REST 2 datasets

ChIP neural ENCSR000BTV.REST.neural 354 bp overlap

ChIP neural cell ENCFF882LXX 314 bp overlap

SMC3 2 datasets

ChIP neural ENCSR404BPV.SMC3.neural 259 bp overlap

ChIP neural cell ENCFF795YGY 354 bp overlap

SOX11 1 dataset

ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 114 bp overlap

TBX2 2 datasets

ChIP Kelly GSE94822.TBX2.Kelly 86 bp overlap

ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 144 bp overlap

TFAP2B 1 dataset

ChIP SK-N-SH ENCFF869XXQ 190 bp overlap

VENTX 1 dataset

Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap

ZNF652 1 dataset

Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap

Znf423 1 dataset

Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap

Genome Browser