chr2 : 14,400,783 – 14,401,373
590 bp 30 TFs 1 linked gene
This 590 bp open chromatin element is linked to LINC00276 and is bound by 30 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00276 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:14,395,783 – 14,406,373
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 418 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 220 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 408 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 509 bp overlap
CTCF 3 datasets
ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 193 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 312 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 433 bp overlap
ESR1 1 dataset
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 181 bp overlap
ESRRA 1 dataset
Motif DE_60h DE_60h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif DE_60h DE_60h-ESRRB_MA0141.4 10 bp overlap
Esrrg 1 dataset
Motif DE_60h DE_60h-Esrrg_MA0643.2 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 564 bp overlap
ChIP DE DE-FOXA2-2 590 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCFF485YIB 85 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 590 bp overlap
ChIP DE DE-GATA4-2 590 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 416 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 590 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 578 bp overlap
ChIP DE DE-GATA6-2 590 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 334 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 353 bp overlap
ChIP foregut GSE117136.GATA6.foregut 492 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 586 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 308 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 298 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 338 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 345 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 295 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 226 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 335 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 277 bp overlap
NR2C1 2 datasets
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
NR2F2 2 datasets
Motif DE_60h DE_60h-NR2F2_MA1111.2 7 bp overlap
Motif DE_60h DE_60h-NR2F2_MA1111.2 7 bp overlap
NR4A2 1 dataset
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
NR5A1 1 dataset
Motif DE_60h DE_60h-NR5A1_MA1540.3 12 bp overlap
NR6A1 1 dataset
Motif DE_60h DE_60h-NR6A1_MA1541.2 14 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 287 bp overlap
Nr1H2 2 datasets
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
Nr5A2 1 dataset
Motif DE_60h DE_60h-Nr5A2_MA0505.3 9 bp overlap
OSR1 1 dataset
Motif DE_60h DE_60h-OSR1_MA1542.2 8 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 461 bp overlap
Ppara 2 datasets
Motif DE_60h DE_60h-Ppara_MA2338.1 7 bp overlap
Motif DE_60h DE_60h-Ppara_MA2338.1 7 bp overlap
RORA 1 dataset
Motif DE_60h DE_60h-RORA_MA0071.1 10 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 460 bp overlap
Zic2 1 dataset
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
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