chr19 : 55,481,722 55,482,243
521 bp 38 TFs 4 linked genes
This 521 bp open chromatin element is linked to 4 target genes and is bound by 38 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
NAT14 3.0 kb Proximal Proximity
ZNF628 5.1 kb Proximal Proximity
ZNF628-DT 5.2 kb Proximal Proximity
SSC5D 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:55,476,722 – 55,487,243
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 60 bp overlap
BCL11A 2 datasets
ChIP MCF-10A ERP003925.BCL11A.MCF-10A 194 bp overlap
ChIP MDA-MB-157 ERP003925.BCL11A.MDA-MB-157 353 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 194 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 208 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 521 bp overlap
BRD4 5 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 146 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 521 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 511 bp overlap
ChIP hESC GSE33281.BRD4.hESC 109 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 132 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 106 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 351 bp overlap
E2F6 4 datasets
ChIP H1 ENCFF785DWK 227 bp overlap
ChIP H1 ENCFF785DWK 414 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 53 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 351 bp overlap
ERG 3 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 138 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 60 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 131 bp overlap
ESR1 1 dataset
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 389 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 210 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin-Herceptin-ICI GSE101407.FOXA1.breast-cancer_heregulin-Herceptin-ICI 521 bp overlap
GABPA 4 datasets
ChIP H1 ENCFF739QFD 182 bp overlap
ChIP H1 ENCFF739QFD 55 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 87 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 174 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 412 bp overlap
HEXIM1 2 datasets
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 60 bp overlap
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 57 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 158 bp overlap
ChIP WTC11 ENCFF223QFY 279 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 88 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 54 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 521 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 521 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 450 bp overlap
POLR2A 1 dataset
ChIP HeLa-S3 ENCFF224LWS 410 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 521 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 119 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 521 bp overlap
RBFOX2 3 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 145 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 146 bp overlap
ChIP K562 ENCFF196WTG 170 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 521 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 521 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 521 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 238 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 199 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 101 bp overlap
SSRP1 1 dataset
ChIP HT-1080_AclacinomycinA GSE107595.SSRP1.HT-1080_AclacinomycinA 224 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 332 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 356 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 212 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 131 bp overlap
ZFX 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 294 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 176 bp overlap
ZNF445 1 dataset
ChIP HEK293T GSE78099.ZNF445.HEK293T 100 bp overlap