chr19 : 53,774,097 53,775,097
1,000 bp 24 TFs 7 linked genes
This 1.0 kb open chromatin element is linked to 7 target genes and is bound by 24 transcription factors.
Linked Genes
7 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
SEPTIN7P8 817 bp At TSS Proximity
ENSG00000269564 12.3 kb Distal Multiome
NLRP12 49.8 kb Distal Multiome
MYADM 91.6 kb Distal Multiome
CACNG8 188.3 kb Distal Multiome
ZNF331 253.6 kb Distal Multiome
ZNF761 342.6 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:53,769,097 – 53,780,097
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 190 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 218 bp overlap
BRD4 2 datasets
ChIP HCT-15 GSE73319.BRD4.HCT-15 349 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 184 bp overlap
EZH2 1 dataset
ChIP T98G GSE112240.EZH2.T98G 207 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 175 bp overlap
ChIP DE DE-FOXA2-1 617 bp overlap
ChIP DE DE-FOXA2-2 515 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 928 bp overlap
ChIP DE DE-GATA4-2 1000 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 302 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 859 bp overlap
ChIP DE DE-GATA6-2 1000 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 167 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 567 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 917 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 670 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 753 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 892 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 246 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 262 bp overlap
ChIP foregut GSE117136.GATA6.foregut 276 bp overlap
ChIP foregut GSE117136.GATA6.foregut 266 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 390 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 300 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 145 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 293 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 284 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
POU5F1 2 datasets
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 179 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 96 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 319 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 908 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 882 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 240 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 598 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 114 bp overlap
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 670 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 898 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 746 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1000 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 985 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 648 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 584 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 907 bp overlap
STAT1 1 dataset
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 195 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 158 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 155 bp overlap