chr2 : 12,404,319 12,404,843
524 bp 34 TFs 0 linked genes
This 524 bp open chromatin element has no linked target genes and is bound by 34 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:12,399,319 – 12,409,843
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 202 bp overlap
CRY1 2 datasets
ChIP U2OS GSE130602.CRY1.U2OS 156 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 156 bp overlap
E2F6 1 dataset
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 280 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 363 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 322 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 443 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 368 bp overlap
JUN 1 dataset
ChIP DE_D1 S08-DE-d1-JUN-exp1 308 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
MAFF 2 datasets
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 127 bp overlap
ChIP HepG2 ENCFF452YUT 266 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 202 bp overlap
ChIP K562 ENCFF455EEO 347 bp overlap
MAFK 5 datasets
ChIP A549 ENCFF371EPR 309 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 140 bp overlap
ChIP HepG2 ENCFF743ZOF 241 bp overlap
ChIP IMR-90 ENCFF336DHZ 262 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 154 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 285 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 524 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 353 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 442 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 290 bp overlap
ChIP hESC GSE18292.NANOG.hESC 169 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 432 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 516 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 503 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 466 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 477 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 378 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 330 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 224 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 179 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBTB1 1 dataset
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 134 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 249 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap