chr19:19,017,061–19,017,561

chr19 : 19,017,061 – 19,017,561

500 bp 21 TFs 13 linked genes

This 500 bp open chromatin element is linked to 13 target genes and is bound by 21 transcription factors.

Linked Genes

13 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ARMC6		16.3 kb	Distal	Multiome
SUGP2		16.5 kb	Distal	Multiome
HOMER3		76.9 kb	Distal	Multiome
SLC25A42		88.6 kb	Distal	Multiome
DDX49		97.6 kb	Distal	Multiome
COPE		97.9 kb	Distal	Multiome
CERS1		121.1 kb	Distal	Multiome
TMEM161A		121.2 kb	Distal	Multiome
MEF2B		174.8 kb	Distal	Multiome
BORCS8		174.8 kb	Distal	Multiome
RFXANK		175.7 kb	Distal	Multiome
UPF1		185.3 kb	Distal	Multiome
TM6SF2		256.0 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

21 transcription factors

BRD3 2 datasets

ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 157 bp overlap

ChIP MV4-11_IBET151_5000nM GSE120715.BRD3.MV4-11_IBET151_5000nM 163 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 294 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 451 bp overlap

ChIP DE DE-FOXA2-2 439 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 430 bp overlap

ChIP DE DE-GATA4-2 498 bp overlap

GATA6 4 datasets

ChIP DE DE-GATA6-1 486 bp overlap

ChIP DE DE-GATA6-2 496 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 407 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 352 bp overlap

HAND2 1 dataset

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 330 bp overlap

HNRNPH1 1 dataset

ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 152 bp overlap

ChIP 786-O GSE86092.JUN.786-O 285 bp overlap

ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 304 bp overlap

NCAPH2 1 dataset

ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 219 bp overlap

NR3C1 1 dataset

ChIP LCL_DEX GSE45638.NR3C1.LCL_DEX 94 bp overlap

ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 197 bp overlap

PHOX2B 1 dataset

ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 223 bp overlap

POLR2A 1 dataset

ChIP gastrocnemius medialis ENCFF145VIB 261 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 451 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 393 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 344 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 279 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 330 bp overlap

TRIM28 1 dataset

ChIP HCT-116 GSE72622.TRIM28.HCT-116 195 bp overlap

ZFP64 1 dataset

ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 151 bp overlap

ZNF121 1 dataset

ChIP HEK293 ENCSR224QDY.ZNF121.HEK293 210 bp overlap