This gene encodes a member of the arginine/serine-rich family of splicing factors. The encoded protein functions in mRNA processing. Alternatively spliced transcript variants have been described. [provided by RefSeq, Feb 2009]
Transcription factors with Perturb-seq knockdown data for SUGP2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SUGP2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SUGP2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr19:18,785,146–18,785,600 | 248.5 kb | Distal (>10kb) Multiome | 247 | |
| chr19:18,831,386–18,833,070 | 201.9 kb | Distal (>10kb) Multiome | 833 | |
| chr19:18,870,063–18,870,526 | 163.4 kb | Distal (>10kb) Multiome | 148 | |
| chr19:18,895,036–18,896,591 | 137.7 kb | Distal (>10kb) Multiome | 554 | |
| chr19:18,918,971–18,919,972 | 114.3 kb | Distal (>10kb) Multiome | 828 | |
| chr19:18,932,038–18,933,012 | 101.3 kb | Distal (>10kb) Multiome | 312 | |
| chr19:18,940,835–18,941,417 | 92.5 kb | Distal (>10kb) Multiome | 336 | |
| chr19:19,017,061–19,017,561 | 16.5 kb | Distal (>10kb) Multiome | 21 | |
| chr19:19,032,381–19,032,727 | 762 bp | At TSS | 254 | |
| chr19:19,032,820–19,034,059 | 124 bp | At TSS Multiome | 944 | |
| chr19:19,034,180–19,034,559 | 690 bp | At TSS | 427 | |
| chr19:19,063,253–19,064,386 | 29.9 kb | Distal (>10kb) Multiome | 781 | |
| chr19:19,105,310–19,106,514 | 71.9 kb | Distal (>10kb) Multiome | 447 | |
| chr19:19,110,429–19,110,857 | 76.9 kb | Distal (>10kb) Multiome | 131 | |
| chr19:19,119,998–19,121,362 | 86.7 kb | Distal (>10kb) Multiome | 304 | |
| chr19:19,138,171–19,138,698 | 104.7 kb | Distal (>10kb) Multiome | 642 | |
| chr19:19,170,055–19,170,692 | 136.5 kb | Distal (>10kb) Multiome | 403 | |
| chr19:19,191,912–19,193,209 | 158.7 kb | Distal (>10kb) Multiome | 939 | |
| chr19:19,202,895–19,203,773 | 169.7 kb | Distal (>10kb) Multiome | 599 | |
| chr19:19,224,938–19,225,553 | 191.4 kb | Distal (>10kb) Multiome | 646 | |
| chr19:19,261,403–19,261,973 | 227.9 kb | Distal (>10kb) Multiome | 205 | |
| chr19:19,272,869–19,273,464 | 239.3 kb | Distal (>10kb) Multiome | 236 | |
| chr19:19,320,030–19,321,531 | 286.9 kb | Distal (>10kb) Multiome | 839 |
Genomic view of the SUGP2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.