chr15 : 97,301,304 97,301,502
198 bp 41 TFs 1 linked gene
This 198 bp open chromatin element is linked to LINC02253 and is bound by 41 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02253 5.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:97,296,304 – 97,306,502
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 85 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 65 bp overlap
ATF6 1 dataset
Motif ES_0h ES_0h-ATF6_MA1466.2 13 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 100 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 114 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 176 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 116 bp overlap
CREB3 1 dataset
Motif ES_0h ES_0h-CREB3_MA0638.2 12 bp overlap
CTCF 60 datasets
ChIP 22Rv1 ENCFF466OXN 198 bp overlap
ChIP 22Rv1 ENCFF466OXN 160 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
ChIP GM23338 ENCFF531QOI 184 bp overlap
ChIP GM23338 ENCFF772DML 95 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 165 bp overlap
ChIP H1 ENCFF764RHO 81 bp overlap
ChIP H9 ENCFF152GTF 196 bp overlap
ChIP H9 ENCFF152GTF 98 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 108 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 171 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 58 bp overlap
ChIP HEK293 ENCFF498RMM 198 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 143 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 99 bp overlap
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 110 bp overlap
ChIP K-562_8004 GSE131349.CTCF.K-562_8004 104 bp overlap
ChIP KB_5Z GSE134435.CTCF.KB_5Z 120 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 151 bp overlap
ChIP MCF-7 ENCFF139NQI 198 bp overlap
ChIP MCF-7 ENCFF162GNE 198 bp overlap
ChIP MCF-7 ENCFF198DQX 198 bp overlap
ChIP MCF-7 ENCFF414SZG 75 bp overlap
ChIP MCF-7 ENCFF424NQR 156 bp overlap
ChIP MCF-7 ENCFF494VXA 198 bp overlap
ChIP MCF-7 ENCFF844STM 153 bp overlap
ChIP MCF-7 ENCFF954TUV 90 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 198 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 198 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 189 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 189 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 108 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 164 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 126 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 198 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 198 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 198 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 198 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 192 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 144 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 109 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 142 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 143 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 114 bp overlap
ChIP endodermal cell ENCFF471YCZ 195 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 134 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 198 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 158 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 179 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 149 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 108 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 198 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 175 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 181 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 185 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 154 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 171 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 163 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 109 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 163 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 198 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 198 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 198 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 198 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 198 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 198 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 185 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 176 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 198 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 169 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
MAFK 1 dataset
ChIP A549 ENCFF371EPR 78 bp overlap
MSC 1 dataset
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
MYF6 1 dataset
Motif ES_0h ES_0h-MYF6_MA0667.1 10 bp overlap
NFATC3 1 dataset
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFIX 1 dataset
Motif ES_0h ES_0h-NFIX_MA1528.2 14 bp overlap
NKX2-3 1 dataset
Motif ES_0h ES_0h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif ES_0h ES_0h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif ES_0h ES_0h-NKX2-8_MA0673.2 8 bp overlap
NR1D1 1 dataset
Motif ES_0h ES_0h-NR1D1_MA1531.2 14 bp overlap
Nfat5 1 dataset
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Prdm15 1 dataset
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 1 dataset
Motif ES_0h ES_0h-Ptf1A_MA1620.2 8 bp overlap
RAD21 15 datasets
ChIP H1 ENCFF698EWO 198 bp overlap
ChIP H1 ENCFF967OJF 169 bp overlap
ChIP MCF-7 ENCFF694KOM 198 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 198 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 174 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 155 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 163 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 171 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 156 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 187 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 166 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 140 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 192 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 178 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 128 bp overlap
SETX 1 dataset
ChIP A-549_Influenza_PR8_NS1 GSE52936.SETX.A-549_Influenza_PR8_NS1 113 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 193 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 177 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 110 bp overlap
TFAP4 1 dataset
Motif ES_0h ES_0h-TFAP4_MA1570.1 10 bp overlap
Tcf21 1 dataset
Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZIM3 1 dataset
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF343 1 dataset
Motif ES_0h ES_0h-ZNF343_MA1711.2 16 bp overlap
ZNF675 1 dataset
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF684 1 dataset
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
ZNF766 1 dataset
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap