chr14 : 51,988,342 51,988,728
386 bp 20 TFs 1 linked gene
This 386 bp open chromatin element is linked to RTRAF and is bound by 20 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RTRAF 816 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:51,983,342 – 51,993,728
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
BCL11A 4 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 97 bp overlap
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 64 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 97 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 90 bp overlap
BRD2 2 datasets
ChIP K-562 GSE140325.BRD2.K-562 150 bp overlap
ChIP K-562_dilution-6-100 GSE140325.BRD2.K-562_dilution-6-100 129 bp overlap
BRD3 2 datasets
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 176 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 76 bp overlap
BRD4 3 datasets
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 219 bp overlap
ChIP SEM GSE83671.BRD4.SEM 191 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 67 bp overlap
ETS1 3 datasets
ChIP cardiomyocyte_D14 GSE129986.ETS1.cardiomyocyte_D14 285 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 154 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 125 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 257 bp overlap
ChIP DE DE-FOXA2-2 315 bp overlap
GATA1 13 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 150 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 177 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 192 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 148 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 222 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 190 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 222 bp overlap
ChIP erythroblast ENCFF867JAR 241 bp overlap
ChIP erythroblast ENCFF867JAR 375 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 386 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 258 bp overlap
ChIP erythroid_Don002 GSE137982.GATA1.erythroid_Don002 176 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 290 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 173 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 386 bp overlap
ChIP DE DE-GATA4-2 383 bp overlap
ChIP G296S GSE85628.GATA4.G296S 355 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 355 bp overlap
ChIP foregut GSE117136.GATA4.foregut 386 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 386 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 386 bp overlap
GATA6 10 datasets
ChIP AGS GSE51705.GATA6.AGS 196 bp overlap
ChIP DE DE-GATA6-1 347 bp overlap
ChIP DE DE-GATA6-2 355 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 359 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 340 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 314 bp overlap
ChIP foregut GSE117136.GATA6.foregut 315 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 306 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 304 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 318 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 239 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 155 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 60 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 85 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 271 bp overlap
RELA 1 dataset
ChIP SW480_0h_TNFa GSE102796.RELA.SW480_0h_TNFa 139 bp overlap
TAL1 3 datasets
ChIP CD34 GSE52924.TAL1.CD34 175 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 141 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 195 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 346 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 140 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 141 bp overlap