chr14 : 51,826,826 51,827,456
630 bp 39 TFs 4 linked genes
This 630 bp open chromatin element is linked to 4 target genes and is bound by 39 transcription factors.
Linked Genes
4 genes
Link type
Gene Expression Dist. to TSS Distance Link type
GNG2 33.7 kb Distal Multiome
RTRAF 162.6 kb Distal Multiome+HiCAR
FRMD6 175.0 kb Distal Multiome
FRMD6-AS2 175.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:51,821,826 – 51,832,456
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
39 transcription factors
Source
Cell type
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 124 bp overlap
CTCF 2 datasets
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 243 bp overlap
ChIP endodermal cell ENCFF471YCZ 210 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 197 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 194 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 278 bp overlap
ChIP DE DE-FOXA2-1 269 bp overlap
ChIP DE DE-FOXA2-2 543 bp overlap
GATA2 2 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 630 bp overlap
ChIP DE DE-GATA4-2 630 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 630 bp overlap
ChIP DE DE-GATA6-2 630 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 630 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 298 bp overlap
Gata3 2 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
INSM1 1 dataset
Motif DE_60h DE_60h-INSM1_MA0155.1 12 bp overlap
KLF1 1 dataset
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
KLF2 1 dataset
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
Motif DE_60h DE_60h-KLF3_MA1516.2 10 bp overlap
KLF4 1 dataset
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
KLF6 1 dataset
Motif DE_60h DE_60h-KLF6_MA1517.2 9 bp overlap
MEIS1 3 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Mecom 2 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NR2C2 1 dataset
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
PAX6 1 dataset
Motif DE_60h DE_60h-PAX6_MA0069.1 14 bp overlap
PBX1 1 dataset
Motif DE_60h DE_60h-PBX1_MA0070.2 9 bp overlap
Prdm5 1 dataset
Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap
RUNX3 1 dataset
Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 204 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 630 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 289 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 373 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 147 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 624 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 202 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 206 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 452 bp overlap
SUZ12 1 dataset
ChIP Karpas-422_DMSO-D8 GSE134136.SUZ12.Karpas-422_DMSO-D8 188 bp overlap
Smad4 1 dataset
Motif DE_60h DE_60h-Smad4_MA1153.2 7 bp overlap
TBX18 1 dataset
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TRPS1 2 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Thap11 1 dataset
Motif DE_60h DE_60h-Thap11_MA1573.2 14 bp overlap
ZNF16 2 datasets
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap
ZNF281 1 dataset
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
ZNF324 1 dataset
Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap
ZNF708 1 dataset
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
ZNF766 1 dataset
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
ZSCAN4 1 dataset
Motif DE_60h DE_60h-ZSCAN4_MA1155.1 15 bp overlap