chr13 : 94,722,641 – 94,722,972
331 bp 42 TFs 1 linked gene
This 331 bp open chromatin element is linked to SOX21-AS1 and is bound by 42 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SOX21-AS1 9.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:94,717,641 – 94,727,972
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 152 bp overlap
CDX2 1 dataset
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 114 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 331 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 252 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 235 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 180 bp overlap
FOSL2 1 dataset
ChIP NPC GSE122631.FOSL2.NPC 237 bp overlap
FOXA1 5 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 331 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 322 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 331 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 317 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 331 bp overlap
FOXA2 9 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 193 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 327 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 331 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 301 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 331 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 157 bp overlap
ChIP DE DE-FOXA2-1 331 bp overlap
ChIP DE DE-FOXA2-2 331 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 331 bp overlap
GATA2 5 datasets
ChIP HUVEC-C GSE109625.GATA2.HUVEC-C 179 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.GATA2.HUVEC-C_VEGF_4h 206 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 242 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 313 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 327 bp overlap
GATA4 9 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 246 bp overlap
ChIP DE DE-GATA4-1 331 bp overlap
ChIP DE DE-GATA4-2 331 bp overlap
ChIP ESO-26 GSE132813.GATA4.ESO-26 310 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 233 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 245 bp overlap
ChIP foregut GSE117136.GATA4.foregut 331 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 331 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 331 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 305 bp overlap
ChIP AGS GSE51936.GATA6.AGS 236 bp overlap
ChIP DE DE-GATA6-1 331 bp overlap
ChIP DE DE-GATA6-2 331 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 327 bp overlap
ChIP H9 ERP004206.GATA6.H9 255 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 294 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 324 bp overlap
ChIP foregut GSE117136.GATA6.foregut 331 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 331 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 331 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 331 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 123 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 252 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 331 bp overlap
JUN 1 dataset
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 134 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 246 bp overlap
ChIP HAEC GSE89970.JUNB.HAEC 315 bp overlap
KDM1A 3 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 289 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 331 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 321 bp overlap
NR2F6 1 dataset
ChIP K-562 ENCSR707QWA.NR2F6.K-562 119 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 248 bp overlap
PDX1 4 datasets
ChIP H9 ERP004206.PDX1.H9 303 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 331 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 325 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 331 bp overlap
POLR2A 1 dataset
ChIP stomach ENCFF607ZPU 90 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 150 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 144 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 331 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 331 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 227 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 149 bp overlap
RARA 3 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 189 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 330 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 331 bp overlap
RELA 9 datasets
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 230 bp overlap
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 287 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 232 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 161 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 168 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 323 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 158 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 154 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 206 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 253 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 315 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 315 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 161 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 331 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 291 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 329 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 234 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 151 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 331 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 305 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 331 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 331 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 331 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 292 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 331 bp overlap
SOX2 6 datasets
ChIP HNSC GSE69479.SOX2.HNSC 331 bp overlap
ChIP NPC GSE122631.SOX2.NPC 275 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 306 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 266 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 314 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 249 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 283 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 312 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBX5 2 datasets
ChIP G296S_4 GSE85628.TBX5.G296S_4 152 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 224 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 322 bp overlap
TRIM28 5 datasets
ChIP HEK293 ENCFF265CEM 331 bp overlap
ChIP HEK293 ENCFF582MWI 331 bp overlap
ChIP HEK293 ENCFF582MWI 331 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 314 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 314 bp overlap
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