chr13 : 84,455,228 – 84,455,630
402 bp 35 TFs 0 linked genes
This 402 bp open chromatin element has no linked target genes and is bound by 35 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:84,450,228 – 84,460,630
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BCL6 2 datasets
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
Motif ES_0h ES_0h-BCL6_MA0463.3 13 bp overlap
BCL6B 2 datasets
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 306 bp overlap
CTCF 164 datasets
ChIP 22Rv1 ENCFF466OXN 402 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 387 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 324 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 230 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 279 bp overlap
ChIP A673 ENCFF123WOM 327 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 170 bp overlap
ChIP BE2C ENCFF757SRF 293 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 272 bp overlap
ChIP BL41 GSE31485.CTCF.BL41 128 bp overlap
ChIP C4-2B ENCFF821XVN 319 bp overlap
ChIP Caco-2 ENCFF753NZV 129 bp overlap
ChIP Caco-2 ENCFF753NZV 352 bp overlap
ChIP Caco-2 ENCFF934QYS 217 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 118 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP DOHH2 ENCFF637WNW 365 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 168 bp overlap
ChIP GM12875 ENCFF081UCQ 251 bp overlap
ChIP GM12878 ENCFF485TGR 233 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 110 bp overlap
ChIP GM12878 ENCSR000DRZ.CTCF.GM12878 102 bp overlap
ChIP GM23338 ENCFF531QOI 253 bp overlap
ChIP GM23338 ENCFF531QOI 285 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GM23338 ENCFF832KWE 402 bp overlap
ChIP GM23338 ENCFF832KWE 285 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 164 bp overlap
ChIP GP5D_SIRAD21 GSE51234.CTCF.GP5D_SIRAD21 313 bp overlap
ChIP H1 ENCFF414GZI 214 bp overlap
ChIP H1 ENCFF764RHO 216 bp overlap
ChIP H9 ENCFF152GTF 310 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 205 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 257 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 193 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 242 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 201 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 194 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 236 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 171 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 218 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 168 bp overlap
ChIP HCT116 ENCFF003KHP 346 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.CTCF.HEC-1-B_R1-insertion 173 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 97 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 228 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 69 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 178 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 140 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 236 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 177 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 170 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 358 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 279 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 109 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 312 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 268 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 192 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 148 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 129 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 166 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 165 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 115 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 217 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 167 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 151 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 102 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 147 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 149 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 189 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 134 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 323 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 147 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 173 bp overlap
ChIP LNCAP ENCFF223HIG 363 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 250 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 347 bp overlap
ChIP Loucy ENCFF359TVQ 203 bp overlap
ChIP Loucy ENCFF359TVQ 317 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 303 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 275 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 250 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 223 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 259 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 205 bp overlap
ChIP NB4 ENCFF155DNY 251 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 172 bp overlap
ChIP OCI-LY1 ENCFF455ESK 182 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 330 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 325 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 332 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 279 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 179 bp overlap
ChIP PC-3 ENCFF487TUI 371 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 307 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 142 bp overlap
ChIP SK-N-SH ENCFF575DMG 220 bp overlap
ChIP SK-N-SH ENCFF731NJX 247 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 306 bp overlap
ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 156 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 127 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 168 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 110 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 330 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 150 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 246 bp overlap
ChIP VCaP ENCFF858YQT 177 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 279 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 95 bp overlap
ChIP WTC11 ENCFF658QVH 364 bp overlap
ChIP body of pancreas ENCFF269EDN 332 bp overlap
ChIP body of pancreas ENCFF798MEO 91 bp overlap
ChIP body of pancreas ENCFF881RGF 268 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 126 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 279 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 241 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 318 bp overlap
ChIP chondrocyte ENCFF134ORZ 402 bp overlap
ChIP chondrocyte ENCFF134ORZ 348 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 263 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 163 bp overlap
ChIP endodermal cell ENCFF471YCZ 294 bp overlap
ChIP endodermal cell ENCFF471YCZ 294 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 275 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 332 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 306 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 134 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 278 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 230 bp overlap
ChIP esophagus squamous epithelium ENCFF683HYK 233 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 335 bp overlap
ChIP esophagus_squamous-epithelium ENCSR773JBP.CTCF.esophagus_squamous-epithelium 284 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 258 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 113 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 132 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 199 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 260 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 137 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 121 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 158 bp overlap
ChIP islet ERP004003.CTCF.islet 165 bp overlap
ChIP keratinocyte ENCFF667ULX 285 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 225 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 171 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 188 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 210 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 237 bp overlap
ChIP neural crest cell ENCFF182LWK 360 bp overlap
ChIP neural progenitor cell ENCFF420RBO 103 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 182 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 167 bp overlap
ChIP osteoblast ENCFF491ZJZ 353 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 243 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 262 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 232 bp overlap
ChIP pancreas_body ENCSR484DDO.CTCF.pancreas_body 180 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 264 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 237 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 251 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 384 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF9 2 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF047YKA 247 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 122 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP Ishikawa ENCFF570JVV 225 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 115 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
STAT1 2 datasets
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
STAT3 2 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
Spi1 2 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
ZBTB26 2 datasets
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
Motif ES_0h ES_0h-ZBTB26_MA1579.2 8 bp overlap
ZIC4 2 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif ES_0h ES_0h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif ES_0h ES_0h-ZIC5_MA1584.2 15 bp overlap
ZKSCAN1 2 datasets
Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF35 1 dataset
Motif DE_12h DE_12h-ZNF35_MA2333.1 7 bp overlap
ZNF707 2 datasets
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap
Huangfu Lab · Publications · Resources · Contact