chr13 : 78,258,078 78,258,616
538 bp 40 TFs 0 linked genes
This 538 bp open chromatin element has no linked target genes and is bound by 40 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:78,253,078 – 78,263,616
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 271 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 365 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 169 bp overlap
BRD4 2 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 205 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 273 bp overlap
CDX2 1 dataset
Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 427 bp overlap
ChIP DE DE-FOXA2-2 386 bp overlap
GATA2 2 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 168 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 223 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 370 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 305 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 357 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 446 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
Hoxa13 1 dataset
Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 508 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 319 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 301 bp overlap
ChIP hESC GSE18292.NANOG.hESC 137 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 204 bp overlap
NR1I2 1 dataset
Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 346 bp overlap
SOX2 2 datasets
ChIP RENVM GSE49404.SOX2.RENVM 198 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 238 bp overlap
SPI1 1 dataset
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 156 bp overlap
TFCP2 1 dataset
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 259 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap