chr13 : 71,017,593 – 71,018,105
512 bp 30 TFs 1 linked gene
This 512 bp open chromatin element is linked to LINC00348 and is bound by 30 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00348 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:71,012,593 – 71,023,105
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 241 bp overlap
CTCF 44 datasets
ChIP 22Rv1 ENCFF466OXN 512 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 383 bp overlap
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
Motif DE_48h DE_48h-CTCF_MA1929.2 31 bp overlap
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 155 bp overlap
ChIP GM12872 ENCFF697BYI 285 bp overlap
ChIP GM23338 ENCFF531QOI 189 bp overlap
ChIP GM23338 ENCFF772DML 75 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 154 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 54 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 138 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 111 bp overlap
ChIP MCF-7 ENCFF139NQI 277 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 129 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 103 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 274 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 150 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 264 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 183 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 512 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 268 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 115 bp overlap
ChIP endodermal cell ENCFF471YCZ 288 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 232 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 412 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 331 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 148 bp overlap
ChIP hepatocyte ENCFF263BLJ 345 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 148 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 122 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 136 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 141 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 297 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 467 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 257 bp overlap
DUX4 3 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 214 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE119057.ESR1.MCF-7 164 bp overlap
ETV5::HOXA2 3 datasets
Motif DE_36h DE_36h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_48h DE_48h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_60h DE_60h-ETV5HOXA2_MA1948.2 12 bp overlap
FIGLA 4 datasets
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 168 bp overlap
ChIP DE DE-FOXA2-2 339 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 329 bp overlap
ChIP DE DE-GATA4-2 340 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 316 bp overlap
ChIP DE DE-GATA6-2 383 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 223 bp overlap
ChIP foregut GSE117136.GATA6.foregut 282 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MXI1 2 datasets
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
NFYA 3 datasets
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
Motif DE_48h DE_48h-NFYA_MA0060.4 8 bp overlap
Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap
NFYC 3 datasets
Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap
Motif DE_48h DE_48h-NFYC_MA1644.2 7 bp overlap
Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap
RAD21 7 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 301 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 123 bp overlap
ChIP Ishikawa ENCFF570JVV 225 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 117 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 144 bp overlap
SCRT1 6 datasets
Motif DE_36h DE_36h-SCRT1_MA0743.3 10 bp overlap
Motif DE_36h DE_36h-SCRT1_MA0743.3 10 bp overlap
Motif DE_48h DE_48h-SCRT1_MA0743.3 10 bp overlap
Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap
Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap
Motif ES_0h ES_0h-SCRT1_MA0743.3 10 bp overlap
SCRT2 2 datasets
Motif DE_36h DE_36h-SCRT2_MA0744.3 10 bp overlap
Motif DE_60h DE_60h-SCRT2_MA0744.3 10 bp overlap
SMC1A 2 datasets
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 158 bp overlap
ChIP MCF-7 GSE115602.SMC1A.MCF-7 156 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 262 bp overlap
SP5 3 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
STAG1 1 dataset
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 124 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 246 bp overlap
Wt1 3 datasets
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
ZBTB18 2 datasets
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 4 datasets
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN5 3 datasets
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF274 3 datasets
Motif DE_36h DE_36h-ZNF274_MA1592.2 12 bp overlap
Motif DE_48h DE_48h-ZNF274_MA1592.2 12 bp overlap
Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap
ZNF282 2 datasets
Motif DE_36h DE_36h-ZNF282_MA1154.2 15 bp overlap
Motif DE_60h DE_60h-ZNF282_MA1154.2 15 bp overlap
ZNF701 3 datasets
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
ZNF768 2 datasets
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
Huangfu Lab · Publications · Resources · Contact