chr13 : 56,182,320 56,182,973
653 bp 37 TFs 0 linked genes
This 653 bp open chromatin element has no linked target genes and is bound by 37 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:56,177,320 – 56,187,973
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
37 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 132 bp overlap
AR 1 dataset
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 313 bp overlap
ASCL1 2 datasets
Motif DE_72h DE_72h-ASCL1_MA1100.3 8 bp overlap
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
Ascl2 1 dataset
Motif DE_72h DE_72h-Ascl2_MA0816.1 10 bp overlap
BRD4 1 dataset
ChIP COLO-741 GSE73319.BRD4.COLO-741 209 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 380 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 220 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 372 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 484 bp overlap
CTCF 3 datasets
ChIP endodermal cell ENCFF471YCZ 444 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 368 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 421 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF262VBH 191 bp overlap
ChIP BLaER1 ENCFF274GAT 413 bp overlap
ChIP BLaER1 ENCFF460KDD 252 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 177 bp overlap
ChIP hESC GSE26097.EOMES.hESC 171 bp overlap
ESR1 1 dataset
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 324 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 396 bp overlap
ChIP DE DE-FOXA2-2 410 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 653 bp overlap
ChIP DE DE-GATA4-2 647 bp overlap
ChIP foregut GSE117136.GATA4.foregut 328 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 653 bp overlap
ChIP DE DE-GATA6-2 653 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 579 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 438 bp overlap
ChIP foregut GSE117136.GATA6.foregut 329 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 58 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 186 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 256 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 219 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 421 bp overlap
MYOG 1 dataset
Motif DE_72h DE_72h-MYOG_MA0500.3 8 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 211 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 351 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 175 bp overlap
NHLH1 1 dataset
Motif DE_72h DE_72h-NHLH1_MA0048.3 9 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 446 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 403 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 420 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 153 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 653 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 164 bp overlap
SOX21 1 dataset
Motif DE_72h DE_72h-SOX21_MA0866.1 15 bp overlap
Spz1 1 dataset
Motif DE_72h DE_72h-Spz1_MA0111.1 11 bp overlap
TCF7L1 1 dataset
Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
ZNF682 2 datasets
Motif DE_60h DE_60h-ZNF682_MA1599.2 11 bp overlap
Motif DE_72h DE_72h-ZNF682_MA1599.2 11 bp overlap
Zfp335 2 datasets
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap