chr13 : 27,175,125 27,175,369
244 bp 29 TFs 2 linked genes
This 244 bp open chromatin element is linked to USP12-AS1 and USP12 and is bound by 29 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
USP12-AS1 2.9 kb Proximal Proximity
USP12 3.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:27,170,125 – 27,180,369
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 244 bp overlap
BRD4 1 dataset
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 50 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 191 bp overlap
ChIP K562 ENCFF963TXY 244 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 244 bp overlap
ChIP K562 ENCFF673OEZ 203 bp overlap
CEBPA 4 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 137 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 88 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 126 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 88 bp overlap
CEBPB 10 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 244 bp overlap
ChIP HL-60_CEBPB_overexpressed GSE100486.CEBPB.HL-60_CEBPB_overexpressed 62 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 208 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 175 bp overlap
ChIP K562 ENCFF189VBN 210 bp overlap
ChIP K562 ENCFF194QGF 238 bp overlap
ChIP K562 ENCFF584CTB 244 bp overlap
ChIP THP-1_NS1-Pam3csk-4h GSE103477.CEBPB.THP-1_NS1-Pam3csk-4h 206 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 212 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 95 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 140 bp overlap
CREBBP 2 datasets
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 69 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 58 bp overlap
Cebpa 6 datasets
ChIP BLaER1 ENCFF205PMS 72 bp overlap
ChIP BLaER1 ENCFF274GAT 158 bp overlap
ChIP BLaER1 ENCFF460KDD 135 bp overlap
ChIP BLaER1 ENCFF680YXW 55 bp overlap
ChIP BLaER1 ENCFF844FIP 150 bp overlap
ChIP BLaER1 ENCFF896HSY 244 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 183 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 244 bp overlap
ChIP DE DE-FOXA2-2 244 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 128 bp overlap
FOXP1 1 dataset
ChIP U2932 ERP010999.FOXP1.U2932 151 bp overlap
GATA1 5 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 80 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 224 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 147 bp overlap
ChIP erythroblast ENCFF867JAR 244 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 192 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 244 bp overlap
ChIP DE DE-GATA4-2 244 bp overlap
ChIP foregut GSE117136.GATA4.foregut 244 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 244 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 244 bp overlap
GATA6 13 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 168 bp overlap
ChIP DE DE-GATA6-1 244 bp overlap
ChIP DE DE-GATA6-2 244 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 244 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 244 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 244 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 244 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 244 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 244 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 244 bp overlap
ChIP foregut GSE117136.GATA6.foregut 244 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 244 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 244 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 111 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 244 bp overlap
ChIP K562 ENCFF744ALD 244 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 244 bp overlap
ChIP K562 ENCFF055GAZ 168 bp overlap
ChIP K562 ENCFF317JJX 168 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 143 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 162 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 76 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 91 bp overlap
POLR2A 1 dataset
ChIP Raji ENCFF613VGX 130 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 58 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 62 bp overlap
TAL1 7 datasets
ChIP K-562 ENCSR106FRG.TAL1.K-562 219 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 116 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 168 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 164 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 191 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 182 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 165 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 177 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 125 bp overlap