chr12 : 59,963,216 59,964,218
1,002 bp 45 TFs 0 linked genes
This 1.0 kb open chromatin element has no linked target genes and is bound by 45 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:59,958,216 – 59,969,218
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 321 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 251 bp overlap
Crx 1 dataset
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
DUX4 1 dataset
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Dmbx1 1 dataset
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
Dux 1 dataset
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 229 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 154 bp overlap
ESR1 3 datasets
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 266 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 272 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 218 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 285 bp overlap
ChIP DE DE-FOXA2-1 875 bp overlap
ChIP DE DE-FOXA2-2 904 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 311 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 319 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 860 bp overlap
ChIP DE DE-GATA4-2 895 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 422 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 881 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 397 bp overlap
GATA5 1 dataset
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 102 bp overlap
ChIP DE DE-GATA6-1 786 bp overlap
ChIP DE DE-GATA6-2 857 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 313 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 591 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 806 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 643 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 392 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 629 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 622 bp overlap
GSC 1 dataset
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 575 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 613 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE94782.MYCN.NB-1643 143 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 365 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 387 bp overlap
NR2F1 1 dataset
Motif DE_36h DE_36h-NR2F1_MA1537.2 13 bp overlap
Nr2e3 1 dataset
Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 245 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 306 bp overlap
OTX1 1 dataset
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
PPARD 1 dataset
Motif DE_36h DE_36h-PPARD_MA1550.2 14 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 241 bp overlap
RHOXF1 1 dataset
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
RXRG 1 dataset
Motif DE_36h DE_36h-RXRG_MA0856.1 14 bp overlap
Rarg 1 dataset
Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap
Rxra 1 dataset
Motif DE_36h DE_36h-Rxra_MA0512.2 14 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 976 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 371 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 850 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 778 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 191 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 202 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 208 bp overlap
TAL1 1 dataset
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 175 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
ZNF135 1 dataset
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
ZNF418 1 dataset
Motif DE_48h DE_48h-ZNF418_MA1980.1 15 bp overlap