chr12 : 42,762,301 42,762,551
250 bp 27 TFs 0 linked genes
This 250 bp open chromatin element has no linked target genes and is bound by 27 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:42,757,301 – 42,767,551
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
ARNTL 3 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 103 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 103 bp overlap
ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 66 bp overlap
BRD4 3 datasets
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 250 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 250 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 120 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 149 bp overlap
CTCF 1 dataset
ChIP neural cell ENCFF335ADI 217 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 250 bp overlap
ChIP neural cell ENCFF442QNK 206 bp overlap
ESRRA 3 datasets
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 204 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 184 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 79 bp overlap
GATA2 2 datasets
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 61 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 250 bp overlap
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 220 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 250 bp overlap
MED1 6 datasets
ChIP RH4 GSE83726.MED1.RH4 158 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 183 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 183 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 138 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 99 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 250 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 102 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 136 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 127 bp overlap
PGR 3 datasets
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 55 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 189 bp overlap
ChIP myometrium_TP2 GSE137550.PGR.myometrium_TP2 81 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 250 bp overlap
ChIP neural cell ENCFF564MOT 171 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 239 bp overlap
RUVBL2 2 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 117 bp overlap
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 78 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 250 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 63 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 167 bp overlap
SMARCA4 2 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 250 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 51 bp overlap
SMARCC1 2 datasets
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 250 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 250 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 196 bp overlap
ChIP neural cell ENCFF795YGY 194 bp overlap
SS18 2 datasets
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 250 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 250 bp overlap
STAT3 2 datasets
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 136 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 56 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 139 bp overlap
TWIST1 4 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 85 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 58 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 64 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 85 bp overlap
ZNF135 1 dataset
ChIP HEK293T GSE78099.ZNF135.HEK293T 250 bp overlap
ZNF263 2 datasets
ChIP HEK293 ENCFF336CWQ 136 bp overlap
ChIP HEK293 ENCFF336CWQ 250 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 138 bp overlap