chr12 : 42,481,470 42,481,669
199 bp 30 TFs 1 linked gene
This 199 bp open chromatin element is linked to PRICKLE1 and is bound by 30 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PRICKLE1 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:42,476,470 – 42,486,669
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 120 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 199 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 196 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 121 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 199 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 150 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 193 bp overlap
ELF3 1 dataset
ChIP PDAC GSE64557.ELF3.PDAC 117 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 199 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 71 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 199 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 199 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 197 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 199 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 111 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 199 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 116 bp overlap
ChIP H1 ENCFF747ZPQ 199 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 199 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 199 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 173 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 199 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 199 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 199 bp overlap
ChIP hESC GSE20650.NANOG.hESC 199 bp overlap
ChIP hESC GSE18292.NANOG.hESC 139 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF833NJP 199 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 199 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 199 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 199 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 184 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 199 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 179 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 126 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 169 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 199 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 182 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 199 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 199 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 87 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 186 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 178 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 137 bp overlap
TBX5 1 dataset
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 197 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 163 bp overlap
TP53 4 datasets
ChIP H9 GSE142050.TP53.H9 199 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 199 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 199 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 71 bp overlap
TP63 6 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 71 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 199 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 70 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 92 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 127 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 80 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 171 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 199 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 199 bp overlap