chr12 : 29,287,727 29,287,892
165 bp 23 TFs 0 linked genes
This 165 bp open chromatin element has no linked target genes and is bound by 23 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:29,282,727 – 29,292,892
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 94 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 165 bp overlap
BRD4 1 dataset
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 99 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 129 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 165 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 165 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 165 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 161 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 165 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 165 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 158 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 151 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 125 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 110 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 165 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-2 163 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 165 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 165 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 165 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 165 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 165 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 165 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 165 bp overlap
HAND2 2 datasets
ChIP Kelly GSE94822.HAND2.Kelly 95 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 160 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 156 bp overlap
ChIP SK-N-SH ENCFF285GEQ 165 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 165 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 165 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 165 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 165 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 165 bp overlap
SMARCA4 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 165 bp overlap
SNAI2 3 datasets
ChIP SK-N-SH ENCFF449PID 165 bp overlap
ChIP SK-N-SH ENCFF449PID 89 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 60 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 165 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 158 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 158 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 165 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 143 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 165 bp overlap