chr12 : 8,589,422 8,590,041
619 bp 36 TFs 4 linked genes
This 619 bp open chromatin element is linked to 4 target genes and is bound by 36 transcription factors.
Linked Genes
4 genes
Link type
Gene Expression Dist. to TSS Distance Link type
RIMKLB 91.8 kb Distal Multiome
LINC02972 198.4 kb Distal Multiome
LINC00937 199.1 kb Distal Multiome
A2ML1 233.7 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:8,584,422 – 8,595,041
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
BCL11A 1 dataset
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 78 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1_UV GSE103125.BCL6.OCI-Ly1_UV 263 bp overlap
Bcl11B 2 datasets
Motif DE_60h DE_60h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 225 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 258 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 296 bp overlap
CTCF 4 datasets
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 75 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 230 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 249 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 238 bp overlap
DUX4 1 dataset
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
Dux 1 dataset
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
ELF1 1 dataset
Motif DE_72h DE_72h-ELF1_MA0473.4 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 167 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 619 bp overlap
ChIP DE DE-FOXA2-2 560 bp overlap
FOXE1 2 datasets
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 61 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 619 bp overlap
ChIP DE DE-GATA4-2 619 bp overlap
ChIP foregut GSE117136.GATA4.foregut 480 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 619 bp overlap
ChIP DE DE-GATA6-2 619 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 598 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 478 bp overlap
ChIP foregut GSE117136.GATA6.foregut 423 bp overlap
IRF7 1 dataset
Motif DE_72h DE_72h-IRF7_MA0772.2 13 bp overlap
Irf1 1 dataset
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 213 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 259 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 297 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 238 bp overlap
RREB1 2 datasets
Motif DE_60h DE_60h-RREB1_MA0073.2 19 bp overlap
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 205 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 571 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 361 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 371 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 205 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 265 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 476 bp overlap
Sox11 1 dataset
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
ZBTB40 7 datasets
ChIP HepG2 ENCFF130IRD 432 bp overlap
ChIP HepG2 ENCFF162FPR 109 bp overlap
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 391 bp overlap
ChIP K-562 ENCSR158RYZ.ZBTB40.K-562 194 bp overlap
ChIP K562 ENCFF337GJB 481 bp overlap
ChIP K562 ENCFF521DSV 379 bp overlap
ChIP MCF-7 ENCSR318LVG.ZBTB40.MCF-7 127 bp overlap
ZIM3 2 datasets
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ZNF189 2 datasets
Motif DE_60h DE_60h-ZNF189_MA1725.2 9 bp overlap
Motif DE_72h DE_72h-ZNF189_MA1725.2 9 bp overlap