chr1 : 197,922,997 197,923,371
374 bp 30 TFs 1 linked gene
This 374 bp open chromatin element is linked to LHX9 and is bound by 30 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LHX9 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:197,917,997 – 197,928,371
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 296 bp overlap
BRD4 4 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 86 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 148 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.BRD4.LNCaP-clone-FGC_DHT-DMSO 274 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 306 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 244 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 155 bp overlap
CREBBP 1 dataset
ChIP NCI-H3396 GSE32349.CREBBP.NCI-H3396 133 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 95 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 198 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 273 bp overlap
ESR1 3 datasets
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 237 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 144 bp overlap
ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 148 bp overlap
EZH2 6 datasets
ChIP GM23338 ENCFF613YON 306 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 289 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 374 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 95 bp overlap
ChIP fibroblast of lung ENCFF479BAW 213 bp overlap
ChIP neural progenitor cell ENCFF018MKA 374 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 374 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 374 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 374 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 132 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 177 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 365 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 135 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 363 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 252 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 374 bp overlap
RNF2 4 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 323 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 338 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 190 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 97 bp overlap
SMARCC1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 374 bp overlap
SUZ12 2 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 254 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 374 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 151 bp overlap
TET2 1 dataset
ChIP Jurkat_NCKD GSE85524.TET2.Jurkat_NCKD 224 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 272 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 161 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 109 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 374 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 296 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 231 bp overlap