chr1 : 190,863,789 – 190,863,993
204 bp 22 TFs 0 linked genes
This 204 bp open chromatin element has no linked target genes and is bound by 22 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:190,858,789 – 190,868,993
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_L388M_shFOXA1_Ethanol GSE128883.AR.LNCaP_L388M_shFOXA1_Ethanol 121 bp overlap
BRD2 1 dataset
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 194 bp overlap
BRD4 1 dataset
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 204 bp overlap
CTCF 100 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 201 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 204 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 123 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 109 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 201 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 146 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 115 bp overlap
ChIP GM23338 ENCFF772DML 197 bp overlap
ChIP H54 ENCFF255TVO 193 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 154 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 143 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 59 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 108 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 204 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 179 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 141 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 203 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 144 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 144 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 160 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 204 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 161 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 149 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 159 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 97 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 77 bp overlap
ChIP K-562_8004 GSE131349.CTCF.K-562_8004 100 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 135 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 170 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 199 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 97 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 163 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 166 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 157 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 154 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 173 bp overlap
ChIP MCF-10A ERP000783.CTCF.MCF-10A 157 bp overlap
ChIP MCF-7 ENCFF139NQI 204 bp overlap
ChIP MCF-7 ENCFF162GNE 67 bp overlap
ChIP MCF-7 ENCFF198DQX 204 bp overlap
ChIP MCF-7 ENCFF210JUZ 204 bp overlap
ChIP MCF-7 ENCFF494VXA 204 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 178 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 204 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 204 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 195 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 159 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 204 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 188 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 158 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 204 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 204 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 169 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 204 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 128 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 143 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 131 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 204 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 204 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 154 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 187 bp overlap
ChIP PC-3 ENCFF487TUI 204 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 204 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 152 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 110 bp overlap
ChIP SK-N-SH ENCFF575DMG 204 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 140 bp overlap
ChIP SUM159 GSE46055.CTCF.SUM159 98 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 196 bp overlap
ChIP T-47D ENCSR000BNO.CTCF.T-47D 161 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 119 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 204 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 204 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 179 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 204 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 144 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 204 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 132 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF327VLN 204 bp overlap
ChIP endodermal cell ENCFF471YCZ 135 bp overlap
ChIP endothelial cell of umbilical vein ENCFF455OQM 192 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 122 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLW.CTCF.endothelial_umbilical-vein 119 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 204 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 119 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 166 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 184 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 131 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 204 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte ENCFF667ULX 204 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 185 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 192 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 182 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 142 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 176 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 196 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 138 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 171 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 158 bp overlap
ESR1 11 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 204 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 204 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 204 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 204 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 204 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 204 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 204 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 204 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 204 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 204 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 139 bp overlap
FOXA1 1 dataset
ChIP MCF-7 ERP000380.FOXA1.MCF-7 129 bp overlap
JUN 1 dataset
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 184 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 92 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 101 bp overlap
RAD21 22 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 106 bp overlap
ChIP H1 ENCFF698EWO 204 bp overlap
ChIP H1 ENCFF967OJF 187 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 187 bp overlap
ChIP HCT116 ENCFF568PEO 204 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.RAD21.HEC-1-B_F-insertion 103 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 155 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 144 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 110 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 204 bp overlap
ChIP K562 ENCFF634XYR 204 bp overlap
ChIP MCF-7 ENCFF694KOM 204 bp overlap
ChIP MCF-7 ENCFF724VCQ 118 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 204 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 204 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 204 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 204 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 203 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 186 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 122 bp overlap
ChIP T-47D_triptolide GSE111923.RAD21.T-47D_triptolide 204 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 190 bp overlap
RELA 1 dataset
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 81 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 183 bp overlap
SMC1A 3 datasets
ChIP MCF-7 GSE76893.SMC1A.MCF-7 204 bp overlap
ChIP MCF-7 GSE115602.SMC1A.MCF-7 147 bp overlap
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 204 bp overlap
SMC3 4 datasets
ChIP HeLa GSE126990.SMC3.HeLa 198 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 198 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 198 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 201 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 204 bp overlap
STAG1 4 datasets
ChIP HeLa GSE126990.STAG1.HeLa 204 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 204 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 204 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 204 bp overlap
STAG2 1 dataset
ChIP HL-60 GSE131577.STAG2.HL-60 135 bp overlap
TP53 1 dataset
ChIP SaOS-2 GSE15780.TP53.SaOS-2 164 bp overlap
TP63 1 dataset
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 101 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 105 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 120 bp overlap
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