chr10 : 56,028,476 – 56,029,048
572 bp 50 TFs 0 linked genes
This 572 bp open chromatin element has no linked target genes and is bound by 50 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:56,023,476 – 56,034,048
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
CREB1 4 datasets
ChIP LNCaP GSE63034.CREB1.LNCaP 95 bp overlap
ChIP LNCaP-abl GSE63034.CREB1.LNCaP-abl 97 bp overlap
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 230 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 407 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 239 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 2 datasets
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
DMRTC2 1 dataset
Motif DE_12h DE_12h-DMRTC2_MA1479.2 11 bp overlap
ESRRA 4 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 345 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 65 bp overlap
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 461 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 178 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
ETV5::HOXA2 1 dataset
Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap
FOXA1 35 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 222 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 303 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 112 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 215 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 218 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 123 bp overlap
ChIP 22Rv1_TFS_Crispr-36 GSE123618.FOXA1.22Rv1_TFS_Crispr-36 85 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 129 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 287 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 67 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 159 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 78 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 67 bp overlap
ChIP LNCaP_S2101-48H GSE114266.FOXA1.LNCaP_S2101-48H 67 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 139 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 128 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 278 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 377 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 165 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 240 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 256 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 438 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 142 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 194 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 267 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 316 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 301 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 209 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 169 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 166 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 115 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 157 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 305 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 274 bp overlap
ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 316 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 274 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 299 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 105 bp overlap
ChIP PC-3_GSK GSE148982.FOXA2.PC-3_GSK 127 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 278 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 179 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 179 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 267 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 224 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 337 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 342 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 317 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
HOXB2::ELK1 1 dataset
Motif DE_12h DE_12h-HOXB2ELK1_MA1957.1 14 bp overlap
IRF4 1 dataset
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 165 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 359 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 342 bp overlap
ChIP hESC GSE18292.NANOG.hESC 96 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF047YKA 235 bp overlap
NFYB 1 dataset
ChIP GM12878 ENCSR000DNM.NFYB.GM12878 173 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NR1H2::RXRA 1 dataset
Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 266 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RFX5 8 datasets
ChIP H1 ENCFF605EGG 191 bp overlap
ChIP HeLa-S3 ENCFF703XPB 166 bp overlap
ChIP HeLa-S3 ENCSR000ECX.RFX5.HeLa-S3 88 bp overlap
ChIP Hep-G2 ENCSR000EEA.RFX5.Hep-G2 129 bp overlap
ChIP HepG2 ENCFF065UQI 205 bp overlap
ChIP MCF-7 ENCFF983ILY 114 bp overlap
ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 214 bp overlap
ChIP WA01 ENCSR000ECF.RFX5.WA01 93 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 322 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 211 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 323 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 327 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 285 bp overlap
SPI1 4 datasets
ChIP GM12878 ENCFF134LCP 226 bp overlap
ChIP GM12891 ENCFF563IUT 182 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 137 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 122 bp overlap
SPIB 2 datasets
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 111 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 247 bp overlap
TBX5 3 datasets
ChIP G296S GSE85628.TBX5.G296S 278 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 278 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 227 bp overlap
TCF4 1 dataset
ChIP LS180 GSE31939.TCF4.LS180 94 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 388 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF354C 1 dataset
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Huangfu Lab · Publications · Resources · Contact