chr9 : 2,757,333 – 2,757,772

439 bp 52 TFs 0 linked genes

This 439 bp open chromatin element has no linked target genes and is bound by 52 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

52 transcription factors

Alx1 2 datasets

Motif DE_12h DE_12h-Alx1_MA0854.2 8 bp overlap

Motif DE_48h DE_48h-Alx1_MA0854.2 8 bp overlap

Alx4 2 datasets

Motif DE_12h DE_12h-Alx4_MA0853.2 12 bp overlap

Motif DE_48h DE_48h-Alx4_MA0853.2 12 bp overlap

Arid3b 2 datasets

Motif DE_12h DE_12h-Arid3b_MA0601.2 7 bp overlap

Motif DE_48h DE_48h-Arid3b_MA0601.2 7 bp overlap

Arx 2 datasets

Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap

Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap

BARX1 2 datasets

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap

BRD3 1 dataset

ChIP H-1_DE GSE126661.BRD3.H-1_DE 439 bp overlap

BSX 2 datasets

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap

Crx 1 dataset

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

DLX1 2 datasets

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap

DLX6 2 datasets

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap

DPRX 1 dataset

Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap

Dlx3 2 datasets

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap

Dlx4 2 datasets

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

GATA4 1 dataset

ChIP DE DE-GATA4-2 387 bp overlap

GATA6 1 dataset

ChIP DE DE-GATA6-2 437 bp overlap

GBX2 2 datasets

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap

GSC 1 dataset

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

HESX1 2 datasets

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap

HOXA7 2 datasets

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap

Hand1 1 dataset

Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap

Hmx3 2 datasets

Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap

Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap

LBX2 2 datasets

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap

LHX2 2 datasets

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MSX1 2 datasets

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap

MSX2 2 datasets

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap

Msx3 2 datasets

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap

Nobox 2 datasets

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap

OTX1 1 dataset

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap

PITX1 1 dataset

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

RAX 2 datasets

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap

REST 1 dataset

Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap

RHOXF1 1 dataset

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

SMAD2 1 dataset

ChIP endoderm GSE29422.SMAD2.endoderm 257 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 439 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 439 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 334 bp overlap

SMAD2_3 4 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 332 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 369 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 362 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 403 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 184 bp overlap

TBX1 1 dataset

Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap

TBX15 1 dataset

Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap

TBX18 1 dataset

Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap

TBX2 1 dataset

Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap

TBX21 1 dataset

Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap

TBX3 1 dataset

Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap

TBX4 1 dataset

Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap

TBX5 1 dataset

Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap

Wt1 1 dataset

Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap

ZNF324 1 dataset

Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap