chr8 : 128,617,098 – 128,617,661

563 bp 57 TFs 1 linked gene

This 563 bp open chromatin element is linked to LINC00824 and is bound by 57 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC00824		56.3 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

57 transcription factors

ARNT::HIF1A 2 datasets

Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap

Motif ES_0h ES_0h-ARNTHIF1A_MA0259.2 5 bp overlap

Atoh1 2 datasets

Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap

Motif ES_0h ES_0h-Atoh1_MA1467.3 7 bp overlap

BARHL1 2 datasets

Motif DE_12h DE_12h-BARHL1_MA0877.4 6 bp overlap

Motif ES_0h ES_0h-BARHL1_MA0877.4 6 bp overlap

BARHL2 2 datasets

Motif DE_12h DE_12h-BARHL2_MA0635.2 6 bp overlap

Motif ES_0h ES_0h-BARHL2_MA0635.2 6 bp overlap

DUX4 2 datasets

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap

EHF 1 dataset

Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap

ELF1 1 dataset

Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap

ELF3 1 dataset

Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap

ETV1 1 dataset

Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap

ETV2::FOXI1 2 datasets

Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap

Motif ES_0h ES_0h-ETV2FOXI1_MA1942.2 11 bp overlap

ETV2::HOXB13 1 dataset

Motif DE_12h DE_12h-ETV2HOXB13_MA1943.2 13 bp overlap

ETV5::HOXA2 2 datasets

Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap

Motif ES_0h ES_0h-ETV5HOXA2_MA1948.2 12 bp overlap

ETV7 1 dataset

Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap

Elf5 1 dataset

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

Erg 1 dataset

Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap

Foxl2 2 datasets

Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap

Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap

GABPA 1 dataset

Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap

GATA6 2 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 292 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 301 bp overlap

HAND2 2 datasets

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap

HIF1A 2 datasets

Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap

Motif ES_0h ES_0h-HIF1A_MA1106.2 6 bp overlap

Hmx2 1 dataset

Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap

Hmx3 1 dataset

Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

ISL2 1 dataset

Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap

Ikzf3 1 dataset

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

JUN 2 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 450 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 275 bp overlap

KDM4A 1 dataset

ChIP H1 ENCFF078LED 395 bp overlap

MAFF 1 dataset

Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap

MGA::EVX1 1 dataset

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

Mafb 1 dataset

Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap

NANOG 2 datasets

ChIP GM23338 ENCFF065NZG 311 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 191 bp overlap

NEUROD1 2 datasets

Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap

Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 2 datasets

Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap

Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap

NRL 1 dataset

Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap

Neurod2 2 datasets

Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap

Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap

Nkx3-2 1 dataset

Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap

Nr1h3::Rxra 1 dataset

Motif ES_0h ES_0h-Nr1h3Rxra_MA0494.2 16 bp overlap

PAX3 2 datasets

Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap

Motif ES_0h ES_0h-PAX3_MA0780.1 10 bp overlap

POLR2A 1 dataset

ChIP GM23338 ENCFF450WCS 375 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 425 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 357 bp overlap

Pax7 2 datasets

Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap

Motif ES_0h ES_0h-Pax7_MA0680.3 10 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

SMAD2_3 1 dataset

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 415 bp overlap

SPIB 1 dataset

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

Spi1 1 dataset

Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap

TEAD1 3 datasets

Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap

Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap

ChIP WTC11 ENCFF502QUV 383 bp overlap

TEAD2 2 datasets

Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap

Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap

TEAD3 2 datasets

Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap

Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap

TEAD4 2 datasets

Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap

Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap

TWIST1 2 datasets

Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap

Motif ES_0h ES_0h-TWIST1_MA1123.3 8 bp overlap

ZNF175 1 dataset

Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap

ZNF324 1 dataset

Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap

ZNF416 2 datasets

Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap

Motif ES_0h ES_0h-ZNF416_MA1979.2 10 bp overlap

ZNF528 1 dataset

Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap

ZNF582 2 datasets

Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap

Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap