chr1 : 169,902,801 – 169,903,048
247 bp 22 TFs 1 linked gene
This 247 bp open chromatin element is linked to SCYL3 and is bound by 22 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SCYL3 8.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:169,897,801 – 169,908,048
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 236 bp overlap
ChIP T-cell_iBET GSE138084.BRD4.T-cell_iBET 247 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 247 bp overlap
CTCF 1 dataset
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 94 bp overlap
ERG 28 datasets
ChIP HAEC GSE89970.ERG.HAEC 166 bp overlap
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 200 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 157 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 229 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 247 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 148 bp overlap
ChIP aortic-endothelial-cell_D1 GSE139377.ERG.aortic-endothelial-cell_D1 234 bp overlap
ChIP aortic-endothelial-cell_D13 GSE139377.ERG.aortic-endothelial-cell_D13 241 bp overlap
ChIP aortic-endothelial-cell_D14 GSE139377.ERG.aortic-endothelial-cell_D14 247 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 173 bp overlap
ChIP aortic-endothelial-cell_D17 GSE139377.ERG.aortic-endothelial-cell_D17 205 bp overlap
ChIP aortic-endothelial-cell_D19 GSE139377.ERG.aortic-endothelial-cell_D19 193 bp overlap
ChIP aortic-endothelial-cell_D21 GSE139377.ERG.aortic-endothelial-cell_D21 216 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 202 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 224 bp overlap
ChIP aortic-endothelial-cell_D33 GSE139377.ERG.aortic-endothelial-cell_D33 192 bp overlap
ChIP aortic-endothelial-cell_D38 GSE139377.ERG.aortic-endothelial-cell_D38 201 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 247 bp overlap
ChIP aortic-endothelial-cell_D4 GSE139377.ERG.aortic-endothelial-cell_D4 193 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 211 bp overlap
ChIP aortic-endothelial-cell_D44 GSE139377.ERG.aortic-endothelial-cell_D44 203 bp overlap
ChIP aortic-endothelial-cell_D46 GSE139377.ERG.aortic-endothelial-cell_D46 239 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 219 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 234 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 206 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 218 bp overlap
ChIP aortic-endothelial-cell_D53 GSE139377.ERG.aortic-endothelial-cell_D53 202 bp overlap
ChIP arterial-endothelial-cells GSE128382.ERG.arterial-endothelial-cells 183 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 183 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 209 bp overlap
FOXA1 1 dataset
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 164 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 247 bp overlap
ChIP DE DE-FOXA2-2 247 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 166 bp overlap
GATA2 5 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 227 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 185 bp overlap
ChIP TSU-1621MT GSE60477.GATA2.TSU-1621MT 242 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 247 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 247 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 247 bp overlap
ChIP DE DE-GATA4-2 247 bp overlap
ChIP foregut GSE117136.GATA4.foregut 236 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 247 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 247 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 243 bp overlap
ChIP DE DE-GATA6-2 247 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 233 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 247 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 247 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 247 bp overlap
GFI1B 1 dataset
ChIP SET-2 GSE121424.GFI1B.SET-2 132 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 186 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 247 bp overlap
LYL1 1 dataset
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 208 bp overlap
MYCN 1 dataset
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 127 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 167 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 238 bp overlap
RELA 17 datasets
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 189 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 197 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 244 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 203 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 214 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 187 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 164 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 241 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 167 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 174 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 207 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 247 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 197 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 187 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 238 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 224 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 234 bp overlap
RNF2 1 dataset
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 182 bp overlap
SPI1 2 datasets
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 109 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 134 bp overlap
TAL1 1 dataset
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 247 bp overlap
TBX21 2 datasets
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 241 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 205 bp overlap
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