chr6 : 116,063,869 – 116,064,227
358 bp 28 TFs 1 linked gene
This 358 bp open chromatin element is linked to FRK and is bound by 28 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FRK 3.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:116,058,869 – 116,069,227
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
CTCF 61 datasets
ChIP BC-3 GSE135740.CTCF.BC-3 122 bp overlap
ChIP Caco-2 ENCFF934QYS 153 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 145 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 132 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 138 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 138 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 118 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 154 bp overlap
ChIP GM12864 ENCFF357DQE 208 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 102 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 103 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 91 bp overlap
ChIP GM12872 ENCFF697BYI 205 bp overlap
ChIP GM12872 ENCSR000DRN.CTCF.GM12872 104 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 112 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 230 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 122 bp overlap
ChIP GM23338 ENCFF772DML 129 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 169 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 158 bp overlap
ChIP HCT116 ENCFF003KHP 257 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 69 bp overlap
ChIP HEC-1-B_FFRR-mutation GSE140868.CTCF.HEC-1-B_FFRR-mutation 71 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 121 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 116 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 178 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 135 bp overlap
ChIP HeLa-S3 ENCFF565UFR 124 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 68 bp overlap
ChIP HepG2 ENCFF668CTD 125 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 257 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 171 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 185 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 110 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 103 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 110 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 73 bp overlap
ChIP K562 ENCFF400DFR 146 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 100 bp overlap
ChIP MCF-7 ENCFF162GNE 165 bp overlap
ChIP MCF-7 ENCFF198DQX 180 bp overlap
ChIP MCF-7 ENCFF494VXA 180 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 120 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 137 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 189 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 128 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 111 bp overlap
ChIP OCI-LY1 ENCFF455ESK 261 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 89 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 260 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 182 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 218 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 191 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 101 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 155 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 185 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF327VLN 279 bp overlap
ChIP endodermal cell ENCFF471YCZ 178 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 140 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 223 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 74 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 141 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 156 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 147 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 159 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 165 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 151 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
ESRRA 4 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 170 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 142 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 210 bp overlap
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
Esrrg 1 dataset
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
MXI1 1 dataset
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 121 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
NR2F2 1 dataset
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
NR5A1 2 datasets
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
ChIP HepG2 ENCFF970YZO 206 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
Ppara 1 dataset
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
RAD21 13 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 114 bp overlap
ChIP GM12878 ENCSR000EAC.RAD21.GM12878 112 bp overlap
ChIP H1 ENCFF698EWO 174 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.RAD21.HEC-1-B_F-insertion 121 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 54 bp overlap
ChIP HepG2 ENCFF906QIS 162 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 84 bp overlap
ChIP MCF-7 ENCFF694KOM 202 bp overlap
ChIP MCF-7 ENCFF724VCQ 172 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 170 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 129 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 113 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 114 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 106 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 148 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 117 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 106 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 102 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 100 bp overlap
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