chr6 : 97,473,539 – 97,474,347
808 bp 40 TFs 0 linked genes
This 808 bp open chromatin element has no linked target genes and is bound by 40 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:97,468,539 – 97,479,347
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 206 bp overlap
BHLHE22 1 dataset
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
Bhlha15 1 dataset
Motif DE_60h DE_60h-Bhlha15_MA1472.3 8 bp overlap
CTCF 84 datasets
ChIP A-549 ENCSR000AUE.CTCF.A-549 313 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 298 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 184 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 360 bp overlap
ChIP A673 ENCFF123WOM 382 bp overlap
ChIP A673 ENCFF123WOM 177 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 276 bp overlap
ChIP C4-2B ENCFF821XVN 594 bp overlap
ChIP C4-2B ENCFF821XVN 394 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 195 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 302 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 175 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 264 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 162 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 117 bp overlap
ChIP GM23338 ENCFF531QOI 389 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H54 ENCFF255TVO 225 bp overlap
ChIP H9 ENCFF152GTF 202 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 420 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 212 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 261 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 310 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 286 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 234 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 273 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 319 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 480 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 312 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 165 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 222 bp overlap
ChIP HCT-116 GSE92879.CTCF.HCT-116 242 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 216 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 286 bp overlap
ChIP HCT116 ENCFF003KHP 170 bp overlap
ChIP HCT116 ENCFF209YMI 285 bp overlap
ChIP HCT116 ENCFF373YMA 376 bp overlap
ChIP HEK293T GSE115862.CTCF.HEK293T 311 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 137 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 216 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 216 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 264 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 223 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 304 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 312 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 127 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 143 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 122 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 111 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 99 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 148 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 81 bp overlap
ChIP K-562_RF2-mutation GSE140868.CTCF.K-562_RF2-mutation 141 bp overlap
ChIP K-562_WT GSE140868.CTCF.K-562_WT 102 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 565 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 303 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 235 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 146 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 176 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 122 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 212 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 242 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 191 bp overlap
ChIP OCI-LY1 ENCFF455ESK 406 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 418 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 278 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 418 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 258 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 206 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 162 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 238 bp overlap
ChIP endodermal cell ENCFF471YCZ 219 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 365 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 208 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 131 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 146 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 150 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 134 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 293 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 257 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 163 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 360 bp overlap
ERF::NHLH1 1 dataset
Motif DE_60h DE_60h-ERFNHLH1_MA1938.2 16 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 128 bp overlap
ETV7 1 dataset
Motif DE_60h DE_60h-ETV7_MA1708.2 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 493 bp overlap
ChIP DE DE-FOXA2-2 335 bp overlap
GATA1 1 dataset
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 285 bp overlap
ChIP DE DE-GATA4-1 530 bp overlap
ChIP DE DE-GATA4-2 563 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 278 bp overlap
ChIP foregut GSE117136.GATA4.foregut 322 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 584 bp overlap
ChIP DE DE-GATA6-2 636 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 400 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 446 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 492 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 436 bp overlap
ChIP foregut GSE117136.GATA6.foregut 285 bp overlap
HAND2 1 dataset
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
Hnf1A 1 dataset
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
Lef1 2 datasets
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MYF5 1 dataset
Motif DE_60h DE_60h-MYF5_MA1641.2 8 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 228 bp overlap
Motif DE_60h DE_60h-NEUROD1_MA1109.2 8 bp overlap
NR4A1 1 dataset
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
Neurod2 2 datasets
Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Nr2e1 1 dataset
Motif DE_60h DE_60h-Nr2e1_MA0676.1 9 bp overlap
Olig2 1 dataset
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1619.2 8 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 391 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 229 bp overlap
RBPJ 1 dataset
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 463 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 274 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 135 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 264 bp overlap
TCF7 1 dataset
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
TCF7L2 3 datasets
Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap
ChIP HEK293 ENCFF513JQN 500 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 257 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 94 bp overlap
Tcf12 1 dataset
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 342 bp overlap
ZBTB18 1 dataset
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 106 bp overlap
ZNF157 1 dataset
Motif DE_60h DE_60h-ZNF157_MA2331.1 21 bp overlap
ZNF282 1 dataset
Motif DE_60h DE_60h-ZNF282_MA1154.2 15 bp overlap
Zic2 1 dataset
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Huangfu Lab · Publications · Resources · Contact