chr1 : 113,938,331 113,938,852
521 bp 26 TFs 4 linked genes
This 521 bp open chromatin element is linked to 4 target genes and is bound by 26 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
HIPK1 8.6 kb Proximal Proximity
HIPK1-AS1 8.8 kb Proximal Proximity
RSBN1 126.3 kb Distal Multiome
PHTF1 179.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:113,933,331 – 113,943,852
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
26 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 56 bp overlap
BRD4 1 dataset
ChIP T-47D ERP003925.BRD4.T-47D 157 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 363 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 196 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 171 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 171 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 507 bp overlap
ChIP DE DE-FOXA2-2 498 bp overlap
FOXM1 2 datasets
ChIP K-562 ENCSR429QPP.FOXM1.K-562 274 bp overlap
ChIP K562 ENCFF255RHV 370 bp overlap
GATA1 3 datasets
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 203 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 246 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 136 bp overlap
GATA2 3 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 298 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 240 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 134 bp overlap
GATA3 3 datasets
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 214 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 183 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 197 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 521 bp overlap
ChIP DE DE-GATA4-2 521 bp overlap
ChIP foregut GSE117136.GATA4.foregut 358 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 521 bp overlap
ChIP DE DE-GATA6-2 521 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 521 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 243 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 364 bp overlap
ChIP foregut GSE117136.GATA6.foregut 328 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 294 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 248 bp overlap
ChIP K562 ENCFF348IBL 341 bp overlap
KDM1A 2 datasets
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 179 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 149 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 249 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 343 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 326 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 190 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 301 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 229 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 350 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 395 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
SMAD4 1 dataset
ChIP HGrC1_EV GSE138496.SMAD4.HGrC1_EV 159 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 295 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 498 bp overlap
TAL1 1 dataset
ChIP CD34 GSE52924.TAL1.CD34 126 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 189 bp overlap
ZNF770 4 datasets
ChIP HEK293 ENCFF468FCG 95 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 215 bp overlap
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 116 bp overlap
ChIP HepG2 ENCFF233UVH 311 bp overlap