chr6 : 28,583,617 28,583,855
238 bp 35 TFs 2 linked genes
This 238 bp open chromatin element is linked to SCAND3 and ZBED9-AS1 and is bound by 35 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SCAND3 3.4 kb Proximal Proximity
ZBED9-AS1 3.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:28,578,617 – 28,588,855
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
CBFA2T3 1 dataset
ChIP K562 ENCFF673OEZ 219 bp overlap
CCNT2 1 dataset
ChIP K-562 ENCSR000DOA.CCNT2.K-562 169 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 111 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 120 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 117 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 197 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 238 bp overlap
ChIP DE DE-FOXA2-2 238 bp overlap
GATA1 6 datasets
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 61 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 238 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 164 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 199 bp overlap
ChIP K562 ENCFF094CMK 210 bp overlap
GATA2 2 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 238 bp overlap
ChIP K562 ENCFF830LLA 238 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 238 bp overlap
ChIP DE DE-GATA4-2 238 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 238 bp overlap
ChIP foregut GSE117136.GATA4.foregut 238 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 238 bp overlap
ChIP DE DE-GATA6-2 238 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 238 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 238 bp overlap
ChIP foregut GSE117136.GATA6.foregut 238 bp overlap
GLI2 1 dataset
ChIP HEK293 ENCFF700EUN 182 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 238 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 138 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 238 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCFF069PHD 238 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 113 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 167 bp overlap
RBM22 1 dataset
ChIP K-562 GSE120104.RBM22.K-562 199 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 235 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 238 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 150 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 213 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 206 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 231 bp overlap
ChIP K562 ENCFF059YCJ 139 bp overlap
TAL1 2 datasets
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 141 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 193 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 238 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 237 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 238 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 198 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 238 bp overlap
ZBTB6 2 datasets
ChIP HEK293 ENCFF881ECZ 199 bp overlap
ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 153 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 158 bp overlap
ZNF580 2 datasets
ChIP HEK293 ENCFF906MQV 94 bp overlap
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 200 bp overlap
ZNF668 1 dataset
ChIP K562 ENCFF112IUE 139 bp overlap
ZNF75A 1 dataset
ChIP K562 ENCFF410JIO 238 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 96 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 187 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 238 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 121 bp overlap