chr6 : 20,538,824 20,539,149
325 bp 31 TFs 1 linked gene
This 325 bp open chromatin element is linked to CDKAL1 and is bound by 31 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CDKAL1 4.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:20,533,824 – 20,544,149
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP RMG-I GSE120058.ARID1A.RMG-I 325 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 325 bp overlap
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 100 bp overlap
BCL11A 3 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 90 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 102 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 111 bp overlap
BRD4 1 dataset
ChIP NMC24335 GSE96775.BRD4.NMC24335 325 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 229 bp overlap
ChIP K562 ENCFF673OEZ 285 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 325 bp overlap
CTCF 1 dataset
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 137 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 194 bp overlap
EGR1 3 datasets
ChIP K-562 ENCSR000BNE.EGR1.K-562 102 bp overlap
ChIP K-562 ENCSR211LTF.EGR1.K-562 102 bp overlap
ChIP K562 ENCFF006PJY 158 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 155 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 325 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 325 bp overlap
ChIP DE DE-FOXA2-2 325 bp overlap
GATA1 8 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 121 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 63 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 152 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 86 bp overlap
ChIP erythroblast ENCFF867JAR 325 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 325 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 266 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 231 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 171 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 325 bp overlap
ChIP DE DE-GATA4-2 325 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 325 bp overlap
ChIP DE DE-GATA6-2 325 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 325 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 311 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 289 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 126 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 116 bp overlap
MYB 1 dataset
ChIP DU528 GSE94000.MYB.DU528 211 bp overlap
NCAPH2 2 datasets
ChIP RMG-I GSE120058.NCAPH2.RMG-I 325 bp overlap
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 325 bp overlap
POU3F1 1 dataset
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 198 bp overlap
POU3F2 1 dataset
ChIP hiPSC_SGC0946 GSE149017.POU3F2.hiPSC_SGC0946 180 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 262 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 314 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 312 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 325 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 201 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 209 bp overlap
TAL1 5 datasets
ChIP CD34 GSE52924.TAL1.CD34 165 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 125 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 153 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 163 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 135 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 305 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 254 bp overlap