chr5 : 123,092,728 123,093,098
370 bp 26 TFs 2 linked genes
This 370 bp open chromatin element is linked to PRDM6-AS1 and PRDM6 and is bound by 26 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PRDM6-AS1 3.4 kb Proximal Proximity
PRDM6 3.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:123,087,728 – 123,098,098
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
26 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 370 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 370 bp overlap
ChIP H1 ENCFF095JHA 370 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 155 bp overlap
EZH2 10 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 305 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 292 bp overlap
ChIP GM23338 ENCFF613YON 339 bp overlap
ChIP H1 ENCFF232NZA 370 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 123 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 78 bp overlap
ChIP keratinocyte ENCFF070STK 370 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 370 bp overlap
ChIP neural progenitor cell ENCFF018MKA 91 bp overlap
ChIP neural progenitor cell ENCFF472NFV 370 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 242 bp overlap
ChIP DE DE-FOXA2-2 144 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 243 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-2 176 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 281 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 255 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 265 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 161 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 351 bp overlap
JARID2 3 datasets
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 370 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 272 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 328 bp overlap
KMT2A 3 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 241 bp overlap
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 242 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 370 bp overlap
MTF2 2 datasets
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 297 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 370 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 177 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 294 bp overlap
ChIP hESC GSE18292.NANOG.hESC 99 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 370 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 271 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 338 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 370 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 105 bp overlap
RNF2 2 datasets
ChIP K562 ENCFF022XJR 338 bp overlap
ChIP NCCIT GSE71675.RNF2.NCCIT 302 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 220 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 213 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 223 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 333 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 370 bp overlap
SUZ12 2 datasets
ChIP H1 ENCFF881NFR 370 bp overlap
ChIP NT2/D1 ENCFF574SXS 370 bp overlap
TCF12 2 datasets
ChIP WA01 ENCSR000BIT.TCF12.WA01 125 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 126 bp overlap
TCF7L2 1 dataset
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 138 bp overlap