chr5 : 90,747,755 90,748,000
245 bp 39 TFs 0 linked genes
This 245 bp open chromatin element has no linked target genes and is bound by 39 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:90,742,755 – 90,753,000
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
39 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 195 bp overlap
BRD4 2 datasets
ChIP MV4-11_IBET151_5000nM GSE120715.BRD4.MV4-11_IBET151_5000nM 90 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 143 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 187 bp overlap
CRX 1 dataset
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 233 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 197 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 236 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF346MCV 204 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 130 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 126 bp overlap
FOXA1 1 dataset
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 245 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 174 bp overlap
HNF4A 1 dataset
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 118 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 245 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 164 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 245 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 245 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 161 bp overlap
MYOD1 2 datasets
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 164 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 217 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 127 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 191 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 245 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 238 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 139 bp overlap
POU5F1 4 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 245 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 245 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 245 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 171 bp overlap
PRDM14 2 datasets
ChIP hESC GSE22767.PRDM14.hESC 142 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 203 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 243 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 81 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 153 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 245 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 218 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 187 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 245 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 93 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 147 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 245 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 226 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 227 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 208 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ChIP HEK293 GSE76494.ZNF317.HEK293 62 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap