chr5 : 55,541,249 55,541,824
575 bp 32 TFs 1 linked gene
This 575 bp open chromatin element is linked to PLPP1 and is bound by 32 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PLPP1 6.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:55,536,249 – 55,546,824
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
ARID5B 1 dataset
ChIP Jurkat GSE97512.ARID5B.Jurkat 98 bp overlap
BRD4 6 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 433 bp overlap
ChIP MOLT-4_DMSO GSE79288.BRD4.MOLT-4_DMSO 262 bp overlap
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 110 bp overlap
ChIP T-cell_iBET GSE138084.BRD4.T-cell_iBET 158 bp overlap
ChIP T-cell_iBET-BD1 GSE138084.BRD4.T-cell_iBET-BD1 188 bp overlap
ChIP T-cell_iBET-BD2 GSE138084.BRD4.T-cell_iBET-BD2 206 bp overlap
CDK7 1 dataset
ChIP Jurkat_DMSO GSE60027.CDK7.Jurkat_DMSO 175 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 356 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 383 bp overlap
CDX2 1 dataset
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 87 bp overlap
CEBPA 2 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 93 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 127 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 147 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 127 bp overlap
ChIP DE DE-FOXA2-1 575 bp overlap
ChIP DE DE-FOXA2-2 575 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 209 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 146 bp overlap
GATA3 4 datasets
ChIP Jurkat GSE76181.GATA3.Jurkat 173 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 291 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 193 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 312 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 266 bp overlap
ChIP DE DE-GATA4-1 575 bp overlap
ChIP DE DE-GATA4-2 575 bp overlap
ChIP foregut GSE117136.GATA4.foregut 521 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 575 bp overlap
GATA6 10 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 516 bp overlap
ChIP DE DE-GATA6-1 575 bp overlap
ChIP DE DE-GATA6-2 575 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 575 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 575 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 494 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 544 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 575 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 575 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 575 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 172 bp overlap
MAF 1 dataset
ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 258 bp overlap
MYB 4 datasets
ChIP CD4_TH2 GSE72266.MYB.CD4_TH2 159 bp overlap
ChIP DU528 GSE94000.MYB.DU528 129 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 159 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 197 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 135 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 526 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 119 bp overlap
RUNX1 1 dataset
ChIP ALL-SIL GSE102209.RUNX1.ALL-SIL 105 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 575 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 328 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 154 bp overlap
SMARCA4 2 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 158 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 301 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 253 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 220 bp overlap
STAT5B 3 datasets
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 313 bp overlap
ChIP CD8_H9RET GSE64713.STAT5B.CD8_H9RET 117 bp overlap
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 282 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 206 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 236 bp overlap
TCF7 2 datasets
ChIP Hep-G2 ENCSR444LIN.TCF7.Hep-G2 124 bp overlap
ChIP HepG2 ENCFF628OFQ 249 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 178 bp overlap