chr1 : 84,754,125 – 84,754,380
255 bp 33 TFs 0 linked genes
This 255 bp open chromatin element has no linked target genes and is bound by 33 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:84,749,125 – 84,759,380
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 112 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BRD4 3 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 169 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 161 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 165 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 53 bp overlap
CTCF 53 datasets
ChIP A-549 ENCSR000AUE.CTCF.A-549 139 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 255 bp overlap
ChIP C4-2B ENCFF821XVN 143 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 255 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 128 bp overlap
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 99 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 118 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 50 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 58 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 158 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 128 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 159 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 255 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 85 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 75 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 135 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 70 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 141 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 57 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 111 bp overlap
ChIP Panc1 ENCFF056JQX 112 bp overlap
ChIP RWPE2 ENCFF911IEE 74 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 100 bp overlap
ChIP VCaP ENCFF858YQT 56 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 153 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 62 bp overlap
ChIP chondrocyte ENCFF134ORZ 77 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 145 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 228 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF265AZL 78 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF403LNW 65 bp overlap
ChIP endothelial cell ENCFF663LIE 88 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 51 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 252 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 249 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 52 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 146 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 75 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 125 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 167 bp overlap
ChIP left lung ENCFF620MAT 74 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 74 bp overlap
ChIP natural killer cell ENCFF517SNI 155 bp overlap
ChIP nephron ENCFF589HXU 72 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 58 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 134 bp overlap
ChIP plasmablast GSE142493.CTCF.plasmablast 93 bp overlap
ChIP sigmoid colon ENCFF397ZZF 63 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 237 bp overlap
ChIP spleen ENCFF520HPZ 53 bp overlap
ChIP spleen ENCSR225YGX.CTCF.spleen 131 bp overlap
ChIP spleen ENCSR601FEB.CTCF.spleen 111 bp overlap
ChIP spleen ENCSR343RJH.CTCF.spleen 80 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 111 bp overlap
ESR1 3 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 126 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 120 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 173 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 133 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 106 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 134 bp overlap
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 161 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 156 bp overlap
FOSL2 1 dataset
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 255 bp overlap
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 255 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 255 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 92 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 68 bp overlap
MYCN 5 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 247 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 149 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 211 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 177 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 255 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 113 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 162 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 255 bp overlap
PRPF4 2 datasets
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 83 bp overlap
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 81 bp overlap
RAD21 6 datasets
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 92 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 177 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 200 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 169 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 255 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 126 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 255 bp overlap
SMC1 3 datasets
ChIP DKO GSE131606.SMC1.DKO 255 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 224 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 191 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 70 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 200 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 231 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 231 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 74 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
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