chr4 : 164,464,248 164,464,730
482 bp 33 TFs 0 linked genes
This 482 bp open chromatin element has no linked target genes and is bound by 33 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:164,459,248 – 164,469,730
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
CEBPA 1 dataset
ChIP SKH1_CEBPA-ER_E2 GSE102697.CEBPA.SKH1_CEBPA-ER_E2 131 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 482 bp overlap
ChIP neural cell ENCFF442QNK 408 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 122 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 384 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 413 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 417 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 327 bp overlap
HNF1B 1 dataset
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 288 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 482 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 253 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 210 bp overlap
ChIP hESC GSE18292.NANOG.hESC 264 bp overlap
ChIP hESC GSE20650.NANOG.hESC 179 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 284 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 119 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 394 bp overlap
ChIP neural cell ENCFF564MOT 333 bp overlap
REST 3 datasets
ChIP neural ENCSR000BTV.REST.neural 325 bp overlap
ChIP neural cell ENCFF882LXX 424 bp overlap
ChIP neural cell ENCFF882LXX 364 bp overlap
SPI1 1 dataset
ChIP EM-3 GSE128834.SPI1.EM-3 158 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF35 1 dataset
Motif DE_12h DE_12h-ZNF35_MA2333.1 7 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap