chr4 : 148,964,366 148,964,990
624 bp 43 TFs 0 linked genes
This 624 bp open chromatin element has no linked target genes and is bound by 43 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:148,959,366 – 148,969,990
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 269 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 138 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 311 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 255 bp overlap
Crx 2 datasets
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
DUX4 1 dataset
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Dmbx1 1 dataset
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 211 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 308 bp overlap
ChIP DE DE-FOXA2-2 331 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 358 bp overlap
ChIP DE DE-GATA4-2 499 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 432 bp overlap
ChIP DE DE-GATA6-2 394 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 616 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 582 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 520 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 624 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 624 bp overlap
GSC 2 datasets
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Hic1 1 dataset
Motif DE_36h DE_36h-Hic1_MA0739.2 8 bp overlap
Hnf1A 1 dataset
Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap
ISL2 1 dataset
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 345 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 380 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 201 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 365 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 330 bp overlap
Nkx3-1 1 dataset
Motif DE_36h DE_36h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_36h DE_36h-Nkx3-2_MA0122.4 10 bp overlap
Nr2F6 1 dataset
Motif DE_36h DE_36h-Nr2F6_MA0728.1 15 bp overlap
OTX1 2 datasets
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
OTX2 3 datasets
Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 211 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 199 bp overlap
PITX1 2 datasets
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap
Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
PRDM9 1 dataset
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Prdm5 1 dataset
Motif DE_36h DE_36h-Prdm5_MA1999.2 11 bp overlap
RHOXF1 2 datasets
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
Motif DE_36h DE_36h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_36h DE_36h-RORC_MA1151.2 10 bp overlap
Rarb 1 dataset
Motif DE_36h DE_36h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_36h DE_36h-Rarg_MA0859.2 15 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 529 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 363 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 363 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 417 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 379 bp overlap
SOX21 1 dataset
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
Sox1 1 dataset
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TCF7L1 1 dataset
Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap
Wt1 1 dataset
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
ZFP14 1 dataset
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap