chr1 : 79,693,848 79,694,227
379 bp 39 TFs 0 linked genes
This 379 bp open chromatin element has no linked target genes and is bound by 39 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:79,688,848 – 79,699,227
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
39 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 379 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 379 bp overlap
CDX1 1 dataset
Motif DE_60h DE_60h-CDX1_MA0878.3 10 bp overlap
CUX1 1 dataset
Motif DE_60h DE_60h-CUX1_MA0754.3 9 bp overlap
CUX2 1 dataset
Motif DE_60h DE_60h-CUX2_MA0755.2 9 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 203 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 379 bp overlap
ChIP DE DE-FOXA2-2 371 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 379 bp overlap
ChIP DE DE-GATA4-2 379 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 379 bp overlap
ChIP DE DE-GATA6-2 379 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 379 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 379 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 379 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 379 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 255 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 379 bp overlap
HOXB13 1 dataset
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
HOXB4 1 dataset
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD3 1 dataset
Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap
HOXD4 1 dataset
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
Hmx2 1 dataset
Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap
MEF2A 1 dataset
Motif DE_60h DE_60h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_60h DE_60h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif DE_60h DE_60h-MEF2C_MA0497.2 11 bp overlap
MEF2D 1 dataset
Motif DE_60h DE_60h-MEF2D_MA0773.1 12 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA1639.2 9 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
PAX3 1 dataset
Motif DE_60h DE_60h-PAX3_MA0780.1 10 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 378 bp overlap
POU6F1 1 dataset
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap
Pax7 1 dataset
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 379 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 379 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 198 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 279 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 379 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 308 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 323 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 138 bp overlap
TBP 1 dataset
Motif DE_60h DE_60h-TBP_MA0108.3 7 bp overlap
TBX20 1 dataset
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX5 1 dataset
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
Tbx6 1 dataset
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
ZNF675 1 dataset
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap