Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

24 transcription factors

ARID2 1 dataset

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 290 bp overlap

BRD3 1 dataset

ChIP HEK293T GSE39579.BRD3.HEK293T 95 bp overlap

BRD4 2 datasets

ChIP CHL-1 GSE95585.BRD4.CHL-1 424 bp overlap

ChIP HEK293T GSE39579.BRD4.HEK293T 212 bp overlap

CTCF 14 datasets

ChIP HeLa GSE126990.CTCF.HeLa 131 bp overlap

ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 131 bp overlap

ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 190 bp overlap

ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 371 bp overlap

ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 185 bp overlap

ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 110 bp overlap

ChIP chondrocyte ENCFF134ORZ 389 bp overlap

ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 162 bp overlap

ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 319 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 173 bp overlap

ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 193 bp overlap

ChIP neural ENCSR822CEA.CTCF.neural 394 bp overlap

ChIP neural cell ENCFF335ADI 479 bp overlap

ChIP osteocyte ENCFF929FPD 305 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF460KDD 94 bp overlap

EZH2 7 datasets

ChIP A-1847 GSE95643.EZH2.A-1847 352 bp overlap

ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 479 bp overlap

ChIP SF8628 GSE94834.EZH2.SF8628 479 bp overlap

ChIP hepatocyte ENCFF118DKH 352 bp overlap

ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 65 bp overlap

ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 335 bp overlap

ChIP neural progenitor cell ENCFF472NFV 180 bp overlap

EZH2_phosphoT487 1 dataset

ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 373 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 130 bp overlap

ChIP DE DE-GATA4-2 81 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 65 bp overlap

ChIP DE DE-GATA6-2 229 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 191 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 50 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 121 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 192 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 50 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 64 bp overlap

HIC1 1 dataset

ChIP HEK293 ENCSR803GYT.HIC1.HEK293 187 bp overlap

JARID2 2 datasets

ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 242 bp overlap

ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 402 bp overlap

KMT2A 2 datasets

ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 53 bp overlap

ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 287 bp overlap

NEUROD1 1 dataset

ChIP D283-Med GSE92582.NEUROD1.D283-Med 118 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 250 bp overlap

RAD21 3 datasets

ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 416 bp overlap

ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 244 bp overlap

ChIP neural ENCSR198ZYJ.RAD21.neural 346 bp overlap

RNF2 4 datasets

ChIP HUES-64 GSE104059.RNF2.HUES-64 390 bp overlap

ChIP WA01 ENCSR784VUY.RNF2.WA01 327 bp overlap

ChIP WA01 GSE104690.RNF2.WA01 345 bp overlap

ChIP fibroblast GSE139053.RNF2.fibroblast 479 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 166 bp overlap

SMARCA4 3 datasets

ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 294 bp overlap

ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 235 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 263 bp overlap

SMC3 1 dataset

ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 332 bp overlap

SUZ12 1 dataset

ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 223 bp overlap

UBN1 1 dataset

ChIP HeLa GSE45024.UBN1.HeLa 139 bp overlap

WT1 1 dataset

ChIP HEK293 ENCSR966PJJ.WT1.HEK293 479 bp overlap

ZNF366 1 dataset

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 269 bp overlap

ZNF695 1 dataset

ChIP HEK293T GSE78099.ZNF695.HEK293T 140 bp overlap

Gene	Dist. to TSS	Distance	Link type
EPHA5	2.4 kb	Proximal	Proximity
EPHA5-AS1	2.6 kb	Proximal	Proximity
ENSG00000248479	2.6 kb	Proximal	Proximity

Genome Browser