Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

44 transcription factors

ATOH7 1 dataset

Motif DE_48h DE_48h-ATOH7_MA1468.1 10 bp overlap

Atoh1 1 dataset

Motif DE_48h DE_48h-Atoh1_MA0461.3 8 bp overlap

BHLHE23 1 dataset

Motif DE_48h DE_48h-BHLHE23_MA0817.2 10 bp overlap

BRD4 1 dataset

ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 387 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 244 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 471 bp overlap

ChIP DE DE-FOXA2-2 602 bp overlap

FOXD3 2 datasets

Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap

Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap

FOXO1::ELF1 2 datasets

Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap

Motif DE_48h DE_48h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK3 2 datasets

Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap

Motif DE_48h DE_48h-FOXO1ELK3_MA1955.2 13 bp overlap

GATA1::TAL1 3 datasets

Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap

Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap

Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap

GATA2 1 dataset

ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 443 bp overlap

ChIP DE DE-GATA4-2 613 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 290 bp overlap

GATA6 3 datasets

ChIP DE DE-GATA6-1 384 bp overlap

ChIP DE DE-GATA6-2 693 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 713 bp overlap

HDAC2 1 dataset

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 220 bp overlap

HIC2 1 dataset

Motif DE_48h DE_48h-HIC2_MA0738.2 6 bp overlap

MYCN 1 dataset

ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 204 bp overlap

MYOD1 1 dataset

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 205 bp overlap

NEUROG1 1 dataset

Motif DE_48h DE_48h-NEUROG1_MA0623.2 10 bp overlap

NEUROG2 2 datasets

Motif DE_48h DE_48h-NEUROG2_MA0669.1 10 bp overlap

ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 174 bp overlap

NR1H2::RXRA 2 datasets

Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap

Motif DE_48h DE_48h-NR1H2RXRA_MA0115.1 17 bp overlap

NR2C1 2 datasets

Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap

Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap

NR2C2 2 datasets

Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap

Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap

Nr1H2 2 datasets

Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap

Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 2 datasets

Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap

Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 2 datasets

Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap

Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap

OLIG1 1 dataset

Motif DE_48h DE_48h-OLIG1_MA0826.1 10 bp overlap

OLIG2 1 dataset

Motif DE_48h DE_48h-OLIG2_MA0678.1 10 bp overlap

OLIG3 1 dataset

Motif DE_48h DE_48h-OLIG3_MA0827.1 10 bp overlap

PITX3 1 dataset

ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 310 bp overlap

SMAD2 1 dataset

Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 246 bp overlap

SMAD2_3 3 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 401 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 291 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 341 bp overlap

SMARCA4 9 datasets

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 206 bp overlap

ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 439 bp overlap

ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 472 bp overlap

ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 198 bp overlap

ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 367 bp overlap

ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 682 bp overlap

ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 474 bp overlap

ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 193 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 216 bp overlap

SMARCC1 6 datasets

ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 187 bp overlap

ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 232 bp overlap

ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 222 bp overlap

ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 749 bp overlap

ChIP TTC-1240_empty GSE124903.SMARCC1.TTC-1240_empty 426 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 231 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 260 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 277 bp overlap

TCF21 1 dataset

Motif DE_48h DE_48h-TCF21_MA1568.2 10 bp overlap

TFAP2B 1 dataset

ChIP SK-N-SH ENCFF869XXQ 286 bp overlap

ZIM3 2 datasets

Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap

Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap

ZNF449 4 datasets

Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap

Motif DE_48h DE_48h-ZNF449_MA1656.2 10 bp overlap

ChIP HEK293 ENCFF764ZIC 364 bp overlap

ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 312 bp overlap

ZNF454 1 dataset

Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap

ZNF574 3 datasets

Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap

Motif DE_48h DE_48h-ZNF574_MA1982.2 14 bp overlap

Motif DE_60h DE_60h-ZNF574_MA1982.2 14 bp overlap

ZNF652 1 dataset

ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 137 bp overlap

ZSCAN4 2 datasets

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap

Motif DE_48h DE_48h-ZSCAN4_MA1155.1 15 bp overlap

Genome Browser