chr4 : 59,374,515 – 59,374,723
208 bp 41 TFs 0 linked genes
This 208 bp open chromatin element has no linked target genes and is bound by 41 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:59,369,515 – 59,379,723
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
Atoh1 2 datasets
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
Motif ES_0h ES_0h-Atoh1_MA1467.3 7 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
CTCF 116 datasets
ChIP 22Rv1 ENCFF466OXN 208 bp overlap
ChIP 22Rv1 ENCFF466OXN 180 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 208 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 208 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 208 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 135 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 117 bp overlap
ChIP A549 ENCFF182TCQ 206 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 138 bp overlap
ChIP C4-2B ENCFF821XVN 208 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 123 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 188 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 186 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 199 bp overlap
ChIP GM12865 ENCFF067GFI 106 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 100 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 99 bp overlap
ChIP GM12874 ENCFF942MTD 204 bp overlap
ChIP GM12878 ENCFF485TGR 193 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCFF635MMB 206 bp overlap
ChIP GM13977 ENCFF528ESQ 160 bp overlap
ChIP GM23338 ENCFF531QOI 208 bp overlap
ChIP GM23338 ENCFF772DML 146 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 207 bp overlap
ChIP H1 ENCFF764RHO 145 bp overlap
ChIP H9 ENCFF152GTF 208 bp overlap
ChIP H9 ENCFF152GTF 63 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 174 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 173 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 154 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 124 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 157 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 178 bp overlap
ChIP HEK293 ENCFF498RMM 208 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 138 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 186 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 124 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 208 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 173 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 115 bp overlap
ChIP HepG2 ENCFF127KUP 185 bp overlap
ChIP HepG2 ENCFF194VBQ 208 bp overlap
ChIP HepG2 ENCFF348BUL 186 bp overlap
ChIP HepG2 ENCFF757EKU 208 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 208 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 96 bp overlap
ChIP K562 ENCFF082GOI 184 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 134 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 158 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 208 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 180 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 198 bp overlap
ChIP MCF-7 ENCFF198DQX 192 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 208 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 208 bp overlap
ChIP NB4 ENCFF155DNY 188 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 152 bp overlap
ChIP OCI-LY1 ENCFF455ESK 181 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 208 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 208 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 208 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 208 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 156 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 197 bp overlap
ChIP PC-3 ENCFF487TUI 208 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 208 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 148 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 208 bp overlap
ChIP RWPE2 ENCFF911IEE 208 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 108 bp overlap
ChIP SK-N-SH ENCFF575DMG 208 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 185 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 208 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 164 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 194 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 208 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 143 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 75 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 120 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h 114 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 123 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 120 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 184 bp overlap
ChIP WTC11 ENCFF658QVH 208 bp overlap
ChIP endodermal cell ENCFF471YCZ 208 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 208 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 190 bp overlap
ChIP erythroid_Don001 GSE137982.CTCF.erythroid_Don001 157 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 188 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 153 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 208 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 167 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 164 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 173 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 184 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 190 bp overlap
ChIP neural crest cell ENCFF182LWK 208 bp overlap
ChIP neural progenitor cell ENCFF420RBO 208 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 185 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 99 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 200 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 208 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 135 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 208 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 208 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 208 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 121 bp overlap
FOXS1 2 datasets
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Motif ES_0h ES_0h-FOXS1_MA2118.1 8 bp overlap
GRHL2 1 dataset
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 128 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HES6 1 dataset
Motif ES_0h ES_0h-HES6_MA1493.1 10 bp overlap
HES7 1 dataset
Motif ES_0h ES_0h-HES7_MA0822.1 12 bp overlap
HOXB4 1 dataset
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
KLF9 1 dataset
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
MGA 1 dataset
Motif ES_0h ES_0h-MGA_MA0801.1 8 bp overlap
MXI1 1 dataset
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
NEUROD1 2 datasets
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 2 datasets
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap
NR2C2 1 dataset
Motif ES_0h ES_0h-NR2C2_MA0504.2 14 bp overlap
Neurod2 4 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PKNOX2 1 dataset
Motif ES_0h ES_0h-PKNOX2_MA0783.1 12 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap
Prdm4 2 datasets
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
Motif ES_0h ES_0h-Prdm4_MA1647.3 11 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 208 bp overlap
ChIP H1 ENCFF967OJF 208 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 191 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 187 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 184 bp overlap
RXRB 1 dataset
Motif ES_0h ES_0h-RXRB_MA0855.1 14 bp overlap
Rxra 1 dataset
Motif ES_0h ES_0h-Rxra_MA0512.2 14 bp overlap
Smad4 2 datasets
Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap
Motif ES_0h ES_0h-Smad4_MA1153.2 7 bp overlap
TBX1 1 dataset
Motif ES_0h ES_0h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif ES_0h ES_0h-TBX15_MA0803.1 8 bp overlap
TBX20 2 datasets
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
Motif ES_0h ES_0h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif ES_0h ES_0h-TBX21_MA0690.3 10 bp overlap
TBX5 1 dataset
Motif ES_0h ES_0h-TBX5_MA0807.1 8 bp overlap
TFAP4::ETV1 2 datasets
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
Motif ES_0h ES_0h-TFAP4ETV1_MA1966.2 13 bp overlap
TGIF2 1 dataset
Motif ES_0h ES_0h-TGIF2_MA0797.1 12 bp overlap
TGIF2LY 1 dataset
Motif ES_0h ES_0h-TGIF2LY_MA1572.1 12 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
Vdr 2 datasets
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
Motif ES_0h ES_0h-Vdr_MA0693.4 7 bp overlap
ZNF582 2 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
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