chr4 : 42,425,249 42,425,439
190 bp 38 TFs 0 linked genes
This 190 bp open chromatin element has no linked target genes and is bound by 38 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:42,420,249 – 42,430,439
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 190 bp overlap
BCL11A 1 dataset
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 190 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 128 bp overlap
CTCF 6 datasets
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 190 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 178 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 190 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 142 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 186 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 133 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 175 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 123 bp overlap
JUN 1 dataset
ChIP ESC S34-ESC-d0-JUN-exp2 190 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 190 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 147 bp overlap
ChIP H1 ENCFF747ZPQ 190 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 190 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 190 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 157 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 190 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 190 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 190 bp overlap
ChIP hESC GSE20650.NANOG.hESC 151 bp overlap
ChIP hESC GSE18292.NANOG.hESC 116 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
POU5F1 11 datasets
ChIP GM23338 ENCFF333SNB 190 bp overlap
ChIP H1 ENCFF698ZAP 172 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 190 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 180 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 190 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 190 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 190 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 190 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 114 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 190 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 190 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 190 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 190 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 190 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 190 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 190 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 187 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 190 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 172 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 190 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 190 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 190 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 190 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 190 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 190 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 54 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 190 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 190 bp overlap
SMC1 1 dataset
ChIP HAP1 GSE94992.SMC1.HAP1 170 bp overlap
SOX13 1 dataset
Motif DE_12h DE_12h-SOX13_MA1120.2 7 bp overlap
SOX2 5 datasets
Motif DE_12h DE_12h-SOX2_MA0143.5 7 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 190 bp overlap
ChIP hESC GSE18292.SOX2.hESC 122 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 190 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 176 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_12h DE_12h-Sox3_MA0514.3 7 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 190 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 189 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF417 1 dataset
Motif DE_12h DE_12h-ZNF417_MA1727.2 7 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 74 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap