chr1 : 71,087,165 – 71,087,352
187 bp 20 TFs 2 linked genes
This 187 bp open chromatin element is linked to ZRANB2-DT and ZRANB2 and is bound by 20 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ZRANB2-DT 5.8 kb Proximal Proximity
ZRANB2 6.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:71,082,165 – 71,092,352
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
ATF3 2 datasets
ChIP H1 ENCFF852GZY 186 bp overlap
ChIP WA01 ENCSR000BKC.ATF3.WA01 154 bp overlap
ATF4 2 datasets
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap
CEBPA 2 datasets
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
Motif ES_0h ES_0h-CEBPA_MA0102.5 10 bp overlap
CEBPG 2 datasets
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
CTCF 96 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 187 bp overlap
ChIP A673 ENCFF123WOM 187 bp overlap
ChIP BE2C ENCFF757SRF 187 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 151 bp overlap
ChIP C4-2B ENCFF821XVN 187 bp overlap
ChIP C4-2B ENCFF821XVN 187 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 139 bp overlap
ChIP DOHH2 ENCFF637WNW 187 bp overlap
ChIP DOHH2 ENCFF637WNW 115 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 165 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 120 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 136 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 154 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 153 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 172 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 135 bp overlap
ChIP GM12873 ENCFF711LOS 175 bp overlap
ChIP GM23338 ENCFF531QOI 178 bp overlap
ChIP GM23338 ENCFF772DML 187 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 184 bp overlap
ChIP H1 ENCFF764RHO 187 bp overlap
ChIP H9 ENCFF152GTF 180 bp overlap
ChIP H9 ENCFF152GTF 125 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 187 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 187 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 132 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 167 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 170 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 187 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 187 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 187 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 171 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 187 bp overlap
ChIP HCT116 ENCFF003KHP 187 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 125 bp overlap
ChIP HEK293 ENCFF498RMM 167 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 142 bp overlap
ChIP HFFc6 ENCFF005CJI 187 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 166 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 110 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 167 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 167 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 187 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 187 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 187 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 102 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 187 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 121 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 187 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 185 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 56 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 142 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 116 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 187 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 149 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 111 bp overlap
ChIP Loucy ENCFF359TVQ 187 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 187 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 187 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 187 bp overlap
ChIP PC-3 ENCFF487TUI 187 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 187 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 126 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 151 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 187 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 187 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 131 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 144 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 187 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 139 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 187 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 112 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 165 bp overlap
ChIP colon_transverse ENCSR769WKR.CTCF.colon_transverse 187 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 187 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 179 bp overlap
ChIP endodermal cell ENCFF471YCZ 120 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 187 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 187 bp overlap
ChIP epithelial_mammary ENCSR000ALV.CTCF.epithelial_mammary 178 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 187 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 183 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 187 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 182 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 187 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 162 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 157 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 187 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 187 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 135 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 154 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 187 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 179 bp overlap
ChIP transverse colon ENCFF653EYS 187 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 104 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
NFYA 2 datasets
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
Motif ES_0h ES_0h-NFYA_MA0060.4 8 bp overlap
NFYB 2 datasets
ChIP GM12878 ENCFF474DNH 187 bp overlap
ChIP WTC11 ENCFF751ZTQ 187 bp overlap
NFYC 2 datasets
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
Motif ES_0h ES_0h-NFYC_MA1644.2 7 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 71 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 187 bp overlap
ChIP H1 ENCFF967OJF 187 bp overlap
SMC3 2 datasets
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 119 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 155 bp overlap
SOX21 2 datasets
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
Motif ES_0h ES_0h-SOX21_MA0866.1 15 bp overlap
USF1 10 datasets
ChIP H1 ENCFF090WVU 142 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 127 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 129 bp overlap
ChIP HepG2 ENCFF807KYJ 167 bp overlap
ChIP Ishikawa ENCFF728IEG 187 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 122 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 185 bp overlap
ChIP K562 ENCFF633EZB 187 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 187 bp overlap
ChIP WTC11 ENCFF699QGS 187 bp overlap
USF2 8 datasets
ChIP GM12878 GSE97661.USF2.GM12878 184 bp overlap
ChIP H1 ENCFF434EDF 187 bp overlap
ChIP Hep-G2 GSE97661.USF2.Hep-G2 143 bp overlap
ChIP K-562 ENCSR578KEN.USF2.K-562 134 bp overlap
ChIP K562 ENCFF397QGU 187 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 147 bp overlap
ChIP WTC11 ENCFF139JAW 187 bp overlap
ChIP WTC11 ENCFF139JAW 118 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 68 bp overlap
ZNF675 2 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF75A 2 datasets
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Motif ES_0h ES_0h-ZNF75A_MA2097.1 12 bp overlap
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